Gene annotation
Transcriptome id Sobic.006G157600.1
Synonym Sb06g023440, ATM4, TRX-M4, ATHM4
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Thireodoxin family protein (Os) (PubMedID : 27208977)
thioredoxin, putative, expressed
UniProt C5YCL3
Pfam PF14595
Panther DB PTHR10438 PTHR10438:SF299
NCBI CDD KOG0910; Thioredoxin-like protein
KEGG Orthology K03671; thioredoxin 1
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT3G15360 : thioredoxin M-type 4
RAP-DB (Rice) LOC_Os04g44830.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a032119 , Zm00025a010457
Brachypodium KQJ83736 , KQK00500
Barley HORVU2Hr1G091200.5 , HORVU2Hr1G091200.6 , HORVU2Hr1G091200.2 , HORVU2Hr1G091200.3 , HORVU2Hr1G091130.2 , HORVU2Hr1G091130.3 , HORVU2Hr1G091130.1 , HORVU2Hr1G091130.4
Wheat -
Populus -


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cDNA sequences
Sobic.006G157600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G205200 Ser/Thr protein phosphatase family protein, putative, expressed -
2 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
3 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
5 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
6 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
7 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
8 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.001G301700 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
10 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
11 Sobic.003G388251 - K01166: ribonuclease T2
12 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
13 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
14 Sobic.003G428400 beta-galactosidase, putative, expressed K01190: beta-galactosidase
15 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
16 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
17 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
18 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
19 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
20 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -


Gene co-expression network
sample Sobic006G157600 Sobic006G157600 Sobic010G205200 Sobic010G205200 Sobic006G157600--Sobic010G205200 Sobic006G028900 Sobic006G028900 Sobic006G157600--Sobic006G028900 Sobic001G130000 Sobic001G130000 Sobic006G157600--Sobic001G130000 Sobic001G474500 Sobic001G474500 Sobic006G157600--Sobic001G474500 Sobic009G034700 Sobic009G034700 Sobic006G157600--Sobic009G034700 Sobic006G028100 Sobic006G028100 Sobic006G157600--Sobic006G028100 Sobic001G069900 Sobic001G069900 Sobic006G157600--Sobic001G069900 Sobic001G274800 Sobic001G274800 Sobic006G157600--Sobic001G274800 Sobic001G301700 Sobic001G301700 Sobic006G157600--Sobic001G301700 Sobic003G428400 Sobic003G428400 Sobic010G205200--Sobic003G428400 Sobic010G205200--Sobic001G069900 Sobic010G205200--Sobic006G028900 Sobic010G112300 Sobic010G112300 Sobic010G205200--Sobic010G112300 Sobic001G015500 Sobic001G015500 Sobic010G205200--Sobic001G015500 Sobic010G205200--Sobic001G301700 Sobic010G205200--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic010G205200--Sobic001G325200 Sobic007G186200 Sobic007G186200 Sobic010G205200--Sobic007G186200 Sobic006G028900--Sobic001G325200 Sobic006G028900--Sobic009G034700 Sobic004G124200 Sobic004G124200 Sobic006G028900--Sobic004G124200 Sobic006G028900--Sobic001G015500 Sobic008G153400 Sobic008G153400 Sobic006G028900--Sobic008G153400 Sobic005G178100 Sobic005G178100 Sobic006G028900--Sobic005G178100 Sobic006G028900--Sobic010G205200 Sobic002G266000 Sobic002G266000 Sobic006G028900--Sobic002G266000 Sobic004G101900 Sobic004G101900 Sobic006G028900--Sobic004G101900 Sobic001G130000--Sobic001G474500 Sobic001G130000--Sobic009G034700 Sobic007G068100 Sobic007G068100 Sobic001G130000--Sobic007G068100 Sobic003G388251 Sobic003G388251 Sobic001G130000--Sobic003G388251 Sobic001G130000--Sobic001G325200 Sobic001G130000--Sobic001G069900 Sobic008G079300 Sobic008G079300 Sobic001G130000--Sobic008G079300 Sobic008G017800 Sobic008G017800 Sobic001G130000--Sobic008G017800 Sobic004G345800 Sobic004G345800 Sobic001G130000--Sobic004G345800 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic009G057300 Sobic009G057300 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic004G321800 Sobic004G321800 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G474500--Sobic001G130000 Sobic001G474500--Sobic009G034700 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic009G034700--Sobic001G015500 Sobic006G242000 Sobic006G242000 Sobic006G028100--Sobic006G242000 Sobic004G182600 Sobic004G182600 Sobic006G028100--Sobic004G182600 Sobic006G028100--Sobic004G345800 Sobic006G028100--Sobic001G130000 Sobic003G097100 Sobic003G097100 Sobic006G028100--Sobic003G097100 Sobic003G061800 Sobic003G061800 Sobic006G028100--Sobic003G061800 Sobic001G392400 Sobic001G392400 Sobic006G028100--Sobic001G392400 Sobic002G315800 Sobic002G315800 Sobic006G028100--Sobic002G315800 Sobic006G028100--Sobic006G157600 Sobic001G069900--Sobic001G015500 Sobic006G181300 Sobic006G181300 Sobic001G069900--Sobic006G181300 Sobic003G087200 Sobic003G087200 Sobic001G069900--Sobic003G087200 Sobic006G091700 Sobic006G091700 Sobic001G069900--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic001G069900--Sobic009G114000 Sobic001G150600 Sobic001G150600 Sobic001G069900--Sobic001G150600 Sobic001G069900--Sobic005G178100 Sobic001G069900--Sobic009G034700 Sobic001G069900--Sobic001G325200 Sobic003G184900 Sobic003G184900 Sobic001G274800--Sobic003G184900 Sobic006G100332 Sobic006G100332 Sobic001G274800--Sobic006G100332 Sobic001G274800--Sobic004G321800 Sobic002G324000 Sobic002G324000 Sobic001G274800--Sobic002G324000 Sobic004G206401 Sobic004G206401 Sobic001G274800--Sobic004G206401 Sobic003G105800 Sobic003G105800 Sobic001G274800--Sobic003G105800 Sobic001G274800--Sobic007G068100 Sobic001G274800--Sobic007G186200 Sobic001G182500 Sobic001G182500 Sobic001G274800--Sobic001G182500 Sobic001G438600 Sobic001G438600 Sobic001G301700--Sobic001G438600 Sobic001G207400 Sobic001G207400 Sobic001G301700--Sobic001G207400 Sobic001G301700--Sobic001G015500 Sobic001G301700--Sobic002G266000 Sobic008G093000 Sobic008G093000 Sobic001G301700--Sobic008G093000 Sobic002G270500 Sobic002G270500 Sobic001G301700--Sobic002G270500 Sobic002G430000 Sobic002G430000 Sobic001G301700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G301700--Sobic002G111000 Sobic001G301700--Sobic010G205200
Octagon: transcription factors


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