Gene annotation
Transcriptome id Sobic.001G274800.1
Synonym Sb01g026980
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
oxidoreductase, aldo/keto reductase family protein, putative, expressed
UniProt C5WPW1
Pfam PF00248
Panther DB PTHR11732 PTHR11732:SF237
NCBI CDD KOG1577; Aldo/keto reductase family proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G59960 : NAD(P)-linked oxidoreductase superfamily protein
RAP-DB (Rice) LOC_Os10g02480.1 : oxidoreductase, aldo/keto reductase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a003685
Brachypodium KQJ82856
Barley HORVU2Hr1G078570.16 , HORVU2Hr1G078570.15 , HORVU2Hr1G078570.12 , HORVU2Hr1G078570.11 , HORVU2Hr1G078570.10 , HORVU2Hr1G078570.9 , HORVU2Hr1G078570.8 , HORVU2Hr1G078570.7 , HORVU2Hr1G078570.6 , HORVU2Hr1G078570.4 , HORVU2Hr1G078570.3 , HORVU2Hr1G078570.2 , HORVU2Hr1G078570.1
Wheat TraesCS2B02G547800 , TraesCS2B02G333900 , TraesCS2A02G315700 , TraesCS2D02G313700 , TraesCS2A02G315600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G274800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
2 Sobic.006G100332 - -
3 Sobic.004G321800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@saccharopine dehydrogenase, putative, expressed K14157: alpha-aminoadipic semialdehyde synthase
4 Sobic.002G324000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@isocitrate lyase, putative, expressed K01637: E4.1.3.1, isocitrate lyase
5 Sobic.004G206401 - -
6 Sobic.003G105800 No apical meristem protein, putative, expressed -
7 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
8 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
9 Sobic.001G182500 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
11 Sobic.004G050200 Strongly up-regulated in leaf samples inoculated with S. reilianum f. sp. zeae but not S. reilianum f. sp. reilianum(PubMedID : 22670753)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@function as typical DFRs by accepting dihydroflavonol substrates(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
12 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
13 Sobic.003G138200 expressed protein -
14 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
16 Sobic.010G182500 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
17 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
18 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.002G266200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G320600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G274800 Sobic001G274800 Sobic003G184900 Sobic003G184900 Sobic001G274800--Sobic003G184900 Sobic006G100332 Sobic006G100332 Sobic001G274800--Sobic006G100332 Sobic004G321800 Sobic004G321800 Sobic001G274800--Sobic004G321800 Sobic002G324000 Sobic002G324000 Sobic001G274800--Sobic002G324000 Sobic004G206401 Sobic004G206401 Sobic001G274800--Sobic004G206401 Sobic003G105800 Sobic003G105800 Sobic001G274800--Sobic003G105800 Sobic007G068100 Sobic007G068100 Sobic001G274800--Sobic007G068100 Sobic007G186200 Sobic007G186200 Sobic001G274800--Sobic007G186200 Sobic001G182500 Sobic001G182500 Sobic001G274800--Sobic001G182500 Sobic003G184900--Sobic003G105800 Sobic008G079300 Sobic008G079300 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic003G184900--Sobic006G100332 Sobic007G225900 Sobic007G225900 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic005G178100 Sobic005G178100 Sobic003G184900--Sobic005G178100 Sobic003G184900--Sobic001G182500 Sobic001G150600 Sobic001G150600 Sobic006G100332--Sobic001G150600 Sobic006G100332--Sobic003G087200 Sobic009G226300 Sobic009G226300 Sobic006G100332--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic007G187300 Sobic007G187300 Sobic006G100332--Sobic007G187300 Sobic006G030700 Sobic006G030700 Sobic006G100332--Sobic006G030700 Sobic001G249300 Sobic001G249300 Sobic006G100332--Sobic001G249300 Sobic003G148800 Sobic003G148800 Sobic006G100332--Sobic003G148800 Sobic004G321800--Sobic006G100332 Sobic004G321800--Sobic003G087200 Sobic004G321800--Sobic003G148800 Sobic004G321800--Sobic009G226300 Sobic001G325200 Sobic001G325200 Sobic004G321800--Sobic001G325200 Sobic004G321800--Sobic003G105800 Sobic004G321800--Sobic003G184900 Sobic004G321800--Sobic001G150600 Sobic004G320600 Sobic004G320600 Sobic004G321800--Sobic004G320600 Sobic002G190500 Sobic002G190500 Sobic002G324000--Sobic002G190500 Sobic004G113300 Sobic004G113300 Sobic002G324000--Sobic004G113300 Sobic002G324000--Sobic003G184900 Sobic005G130400 Sobic005G130400 Sobic002G324000--Sobic005G130400 Sobic002G324000--Sobic004G321800 Sobic004G050200 Sobic004G050200 Sobic002G324000--Sobic004G050200 Sobic002G324000--Sobic001G274800 Sobic008G182700 Sobic008G182700 Sobic002G324000--Sobic008G182700 Sobic004G060900 Sobic004G060900 Sobic002G324000--Sobic004G060900 Sobic009G241000 Sobic009G241000 Sobic004G206401--Sobic009G241000 Sobic004G206401--Sobic001G274800 Sobic004G043001 Sobic004G043001 Sobic004G206401--Sobic004G043001 Sobic004G206401--Sobic003G184900 Sobic004G206401--Sobic003G105800 Sobic004G206401--Sobic008G079300 Sobic002G265300 Sobic002G265300 Sobic004G206401--Sobic002G265300 Sobic010G182500 Sobic010G182500 Sobic004G206401--Sobic010G182500 Sobic004G206401--Sobic007G186200 Sobic003G105800--Sobic003G184900 Sobic003G105800--Sobic008G079300 Sobic003G105800--Sobic004G321800 Sobic003G105800--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G105800--Sobic002G304000 Sobic003G105800--Sobic007G225900 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic003G105800--Sobic009G226300 Sobic007G068100--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic009G057300 Sobic009G057300 Sobic007G068100--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic007G068100--Sobic009G226300 Sobic007G068100--Sobic004G321800 Sobic007G186200--Sobic001G325200 Sobic007G186200--Sobic002G304000 Sobic007G186200--Sobic009G226300 Sobic001G015500 Sobic001G015500 Sobic007G186200--Sobic001G015500 Sobic007G186200--Sobic007G068100 Sobic003G355600 Sobic003G355600 Sobic007G186200--Sobic003G355600 Sobic007G186200--Sobic001G150600 Sobic007G186200--Sobic004G101900 Sobic007G186200--Sobic009G054500 Sobic001G182500--Sobic003G184900 Sobic001G182500--Sobic006G100332 Sobic004G260000 Sobic004G260000 Sobic001G182500--Sobic004G260000 Sobic001G182500--Sobic004G050200 Sobic001G182500--Sobic009G054500 Sobic003G010600 Sobic003G010600 Sobic001G182500--Sobic003G010600 Sobic001G491800 Sobic001G491800 Sobic001G182500--Sobic001G491800 Sobic001G182500--Sobic009G226300 Sobic007G219900 Sobic007G219900 Sobic001G182500--Sobic007G219900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.