Gene annotation
Transcriptome id Sobic.010G018100.2,Sobic.010G018100.4,Sobic.010G018100.1,Sobic.010G018100.3
Synonym Sb10g001750, XBAT33
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
pollen ankyrin, putative, expressed
UniProt A0A1W0VR31 , A0A1W0VR32 , A0A194YHU9
Pfam PF13857 PF12796 PF12796 PF13857
Panther DB PTHR24128 PTHR24128:SF18
NCBI CDD KOG4214; Myotrophin and similar proteins
KEGG Orthology K19044; E3 ubiquitin-protein ligase XBAT32/33
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G07270 : XB3 ortholog 3 in Arabidopsis thaliana
RAP-DB (Rice) LOC_Os06g03800.1 : pollen ankyrin, putative, expressed
MaizeGDB (Corn) Zm00025a041350 , Zm00025a050199
Brachypodium KQK19666
Barley HORVU7Hr1G011250.2 , HORVU7Hr1G011250.3 , HORVU7Hr1G011250.6 , HORVU7Hr1G011250.4 , HORVU7Hr1G011250.5
Wheat TraesCS7D02G055500 , TraesCS4A02G429100 , TraesCS7A02G060700
Populus -


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cDNA sequences
Sobic.010G018100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G222200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@endo-beta-N-acetylglucosaminidase, putative, expressed -
3 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
4 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
5 Sobic.001G320200 phospholipase D, putative, expressed K01115: phospholipase D1/2
6 Sobic.003G363100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialyltransferase family domain containing protein, expressed -
7 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
8 Sobic.003G388251 - K01166: ribonuclease T2
9 Sobic.002G215800 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
10 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
11 Sobic.003G276000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY26, expressed -
12 Sobic.003G070800 gamma-glutamyltranspeptidase 1 precursor, putative, expressed K18592: GGT1_5, gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase
13 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
14 Sobic.003G365000 cytochrome P450, putative, expressed -
15 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
16 Sobic.007G035000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
17 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
18 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
19 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.010G162900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -


Gene co-expression network
sample Sobic010G018100 Sobic010G018100 Sobic010G043400 Sobic010G043400 Sobic010G018100--Sobic010G043400 Sobic001G222200 Sobic001G222200 Sobic010G018100--Sobic001G222200 Sobic002G274800 Sobic002G274800 Sobic010G018100--Sobic002G274800 Sobic004G124200 Sobic004G124200 Sobic010G018100--Sobic004G124200 Sobic001G320200 Sobic001G320200 Sobic010G018100--Sobic001G320200 Sobic003G363100 Sobic003G363100 Sobic010G018100--Sobic003G363100 Sobic008G189200 Sobic008G189200 Sobic010G018100--Sobic008G189200 Sobic003G388251 Sobic003G388251 Sobic010G018100--Sobic003G388251 Sobic002G215800 Sobic002G215800 Sobic010G018100--Sobic002G215800 Sobic009G126900 Sobic009G126900 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic002G009700 Sobic002G009700 Sobic010G043400--Sobic002G009700 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic006G271200 Sobic006G271200 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic001G222200--Sobic010G018100 Sobic002G217400 Sobic002G217400 Sobic001G222200--Sobic002G217400 Sobic003G416400 Sobic003G416400 Sobic001G222200--Sobic003G416400 Sobic004G337200 Sobic004G337200 Sobic001G222200--Sobic004G337200 Sobic001G222200--Sobic010G043400 Sobic003G436300 Sobic003G436300 Sobic001G222200--Sobic003G436300 Sobic004G265800 Sobic004G265800 Sobic001G222200--Sobic004G265800 Sobic003G403500 Sobic003G403500 Sobic001G222200--Sobic003G403500 Sobic001G222200--Sobic002G274800 Sobic002G274800--Sobic010G043400 Sobic007G225900 Sobic007G225900 Sobic002G274800--Sobic007G225900 Sobic003G252300 Sobic003G252300 Sobic002G274800--Sobic003G252300 Sobic003G105800 Sobic003G105800 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic004G124200--Sobic003G388251 Sobic004G101900 Sobic004G101900 Sobic004G124200--Sobic004G101900 Sobic001G325200 Sobic001G325200 Sobic004G124200--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic004G124200--Sobic001G015500 Sobic004G124200--Sobic009G161000 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic007G068100 Sobic007G068100 Sobic004G124200--Sobic007G068100 Sobic005G178100 Sobic005G178100 Sobic004G124200--Sobic005G178100 Sobic001G320200--Sobic010G018100 Sobic003G097100 Sobic003G097100 Sobic001G320200--Sobic003G097100 Sobic003G206800 Sobic003G206800 Sobic001G320200--Sobic003G206800 Sobic003G365000 Sobic003G365000 Sobic001G320200--Sobic003G365000 Sobic006G028100 Sobic006G028100 Sobic001G320200--Sobic006G028100 Sobic003G200100 Sobic003G200100 Sobic001G320200--Sobic003G200100 Sobic001G130000 Sobic001G130000 Sobic001G320200--Sobic001G130000 Sobic007G135000 Sobic007G135000 Sobic001G320200--Sobic007G135000 Sobic006G242000 Sobic006G242000 Sobic001G320200--Sobic006G242000 Sobic001G469500 Sobic001G469500 Sobic003G363100--Sobic001G469500 Sobic005G217200 Sobic005G217200 Sobic003G363100--Sobic005G217200 Sobic003G363100--Sobic010G018100 Sobic009G000200 Sobic009G000200 Sobic003G363100--Sobic009G000200 Sobic003G363100--Sobic008G189200 Sobic003G363100--Sobic007G135000 Sobic004G028600 Sobic004G028600 Sobic003G363100--Sobic004G028600 Sobic003G363100--Sobic002G274800 Sobic003G276000 Sobic003G276000 Sobic003G363100--Sobic003G276000 Sobic003G244600 Sobic003G244600 Sobic008G189200--Sobic003G244600 Sobic008G190900 Sobic008G190900 Sobic008G189200--Sobic008G190900 Sobic008G189200--Sobic005G217200 Sobic008G189200--Sobic010G043400 Sobic008G189200--Sobic009G126900 Sobic008G189200--Sobic002G274800 Sobic007G092700 Sobic007G092700 Sobic008G189200--Sobic007G092700 Sobic008G189200--Sobic003G105800 Sobic001G150200 Sobic001G150200 Sobic008G189200--Sobic001G150200 Sobic003G388251--Sobic004G124200 Sobic003G388251--Sobic007G068100 Sobic003G388251--Sobic001G325200 Sobic001G474500 Sobic001G474500 Sobic003G388251--Sobic001G474500 Sobic003G388251--Sobic004G101900 Sobic003G388251--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic003G388251--Sobic009G034700 Sobic009G057300 Sobic009G057300 Sobic003G388251--Sobic009G057300 Sobic003G388251--Sobic001G015500 Sobic009G029600 Sobic009G029600 Sobic002G215800--Sobic009G029600 Sobic009G211400 Sobic009G211400 Sobic002G215800--Sobic009G211400 Sobic003G219600 Sobic003G219600 Sobic002G215800--Sobic003G219600 Sobic004G255000 Sobic004G255000 Sobic002G215800--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic002G215800--Sobic001G249300 Sobic001G280200 Sobic001G280200 Sobic002G215800--Sobic001G280200 Sobic003G138200 Sobic003G138200 Sobic002G215800--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic002G215800--Sobic004G260000 Sobic002G215800--Sobic010G107000
Octagon: transcription factors


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