Gene annotation
Transcriptome id Sobic.002G274800.1
Synonym staygreen, Sb02g030830, Sgr;staygreen, NYE1, Sgr, ATNYE1
Functional annotation "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140" (PubMedID : 17513504)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
senescence-inducible chloroplast stay-green protein 1, putative, expressed
UniProt C5X674 , Q5EMP8
Pfam PF12638
Panther DB PTHR31750 PTHR31750:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22920 : non-yellowing 1
RAP-DB (Rice) LOC_Os09g36200.1 : senescence-inducible chloroplast stay-green protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a047782 , Zm00025a014433
Brachypodium KQJ91169
Barley HORVU5Hr1G081500.5 , HORVU5Hr1G081500.4 , HORVU5Hr1G081500.1 , HORVU5Hr1G081500.3 , HORVU5Hr1G081500.2
Wheat TraesCS5D02G325900 , TraesCS5B02G320200 , TraesCS5A02G319900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
3 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
4 Sobic.003G105800 No apical meristem protein, putative, expressed -
5 Sobic.002G249200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed -
6 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
7 Sobic.009G161000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
9 Sobic.001G282600 transporter family protein, putative, expressed -
10 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
11 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
12 Sobic.001G150200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK53b - OsWAK receptor-like protein kinase, expressed -
13 Sobic.001G092000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.010G018100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
15 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
16 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
17 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
18 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
19 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.006G028900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -


Gene co-expression network
sample Sobic002G274800 Sobic002G274800 Sobic010G043400 Sobic010G043400 Sobic002G274800--Sobic010G043400 Sobic007G225900 Sobic007G225900 Sobic002G274800--Sobic007G225900 Sobic003G252300 Sobic003G252300 Sobic002G274800--Sobic003G252300 Sobic003G105800 Sobic003G105800 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic008G189200 Sobic008G189200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic004G124200 Sobic004G124200 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic009G126900 Sobic009G126900 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic002G009700 Sobic002G009700 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic006G271200 Sobic006G271200 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic007G225900--Sobic003G105800 Sobic003G184900 Sobic003G184900 Sobic007G225900--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic007G225900--Sobic008G079300 Sobic005G178100 Sobic005G178100 Sobic007G225900--Sobic005G178100 Sobic007G225900--Sobic009G161000 Sobic007G225900--Sobic002G274800 Sobic004G320600 Sobic004G320600 Sobic007G225900--Sobic004G320600 Sobic009G034700 Sobic009G034700 Sobic007G225900--Sobic009G034700 Sobic003G087200 Sobic003G087200 Sobic007G225900--Sobic003G087200 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G252300--Sobic003G105800 Sobic006G115300 Sobic006G115300 Sobic003G252300--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic003G252300--Sobic008G190900 Sobic004G162400 Sobic004G162400 Sobic003G252300--Sobic004G162400 Sobic003G252300--Sobic008G189200 Sobic003G252300--Sobic007G225900 Sobic001G092000 Sobic001G092000 Sobic003G252300--Sobic001G092000 Sobic003G105800--Sobic003G184900 Sobic003G105800--Sobic008G079300 Sobic004G321800 Sobic004G321800 Sobic003G105800--Sobic004G321800 Sobic001G325200 Sobic001G325200 Sobic003G105800--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G105800--Sobic002G304000 Sobic003G105800--Sobic007G225900 Sobic006G100332 Sobic006G100332 Sobic003G105800--Sobic006G100332 Sobic003G105800--Sobic003G087200 Sobic009G226300 Sobic009G226300 Sobic003G105800--Sobic009G226300 Sobic002G266000 Sobic002G266000 Sobic002G249200--Sobic002G266000 Sobic002G249200--Sobic001G282600 Sobic002G249200--Sobic009G161000 Sobic002G249200--Sobic002G274800 Sobic001G504900 Sobic001G504900 Sobic002G249200--Sobic001G504900 Sobic002G249200--Sobic005G178100 Sobic010G203200 Sobic010G203200 Sobic002G249200--Sobic010G203200 Sobic002G249200--Sobic007G225900 Sobic002G249200--Sobic004G124200 Sobic003G244600 Sobic003G244600 Sobic008G189200--Sobic003G244600 Sobic008G189200--Sobic008G190900 Sobic005G217200 Sobic005G217200 Sobic008G189200--Sobic005G217200 Sobic008G189200--Sobic010G043400 Sobic008G189200--Sobic009G126900 Sobic008G189200--Sobic002G274800 Sobic007G092700 Sobic007G092700 Sobic008G189200--Sobic007G092700 Sobic008G189200--Sobic003G105800 Sobic001G150200 Sobic001G150200 Sobic008G189200--Sobic001G150200 Sobic009G161000--Sobic005G178100 Sobic004G101900 Sobic004G101900 Sobic009G161000--Sobic004G101900 Sobic009G161000--Sobic001G325200 Sobic009G161000--Sobic006G100332 Sobic009G161000--Sobic003G105800 Sobic004G260000 Sobic004G260000 Sobic009G161000--Sobic004G260000 Sobic009G161000--Sobic009G226300 Sobic001G305800 Sobic001G305800 Sobic009G161000--Sobic001G305800 Sobic009G161000--Sobic004G124200 Sobic003G388251 Sobic003G388251 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic004G124200--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic004G124200--Sobic001G015500 Sobic004G124200--Sobic009G161000 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic007G068100 Sobic007G068100 Sobic004G124200--Sobic007G068100 Sobic004G124200--Sobic005G178100 Sobic001G282600--Sobic002G266000 Sobic006G104600 Sobic006G104600 Sobic001G282600--Sobic006G104600 Sobic001G282600--Sobic006G199000 Sobic004G225200 Sobic004G225200 Sobic001G282600--Sobic004G225200 Sobic007G210500 Sobic007G210500 Sobic001G282600--Sobic007G210500 Sobic004G329300 Sobic004G329300 Sobic001G282600--Sobic004G329300 Sobic008G153400 Sobic008G153400 Sobic001G282600--Sobic008G153400 Sobic001G282600--Sobic003G355600 Sobic003G322700 Sobic003G322700 Sobic001G282600--Sobic003G322700
Octagon: transcription factors


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