Gene annotation
Transcriptome id Sobic.008G190900.1
Synonym Sb08g023110
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
thioesterase family protein, putative, expressed
UniProt C5YT27
Pfam PF03061
Panther DB PTHR12418 PTHR12418:SF33
NCBI CDD KOG3328; HGG motif-containing thioesterase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G48320 : Thioesterase superfamily protein
RAP-DB (Rice) LOC_Os03g48480.1 : thioesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017087 , Zm00025a004877
Brachypodium KQJ85598 , KQK13726
Barley HORVU4Hr1G004990.4 , HORVU4Hr1G004990.5 , HORVU4Hr1G004990.6 , HORVU4Hr1G004990.7 , HORVU4Hr1G004990.1 , HORVU4Hr1G004990.2 , HORVU4Hr1G004990.3 , HORVU4Hr1G004990.8
Wheat TraesCS4D02G028800 , TraesCS3D02G072800 , TraesCS5A02G003900 , TraesCS5A02G003900 , TraesCS3A02G073000 , TraesCS4D02G029000
Populus -


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cDNA sequences
Sobic.008G190900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.003G105800 No apical meristem protein, putative, expressed -
3 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
4 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
5 Sobic.006G086100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
6 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
7 Sobic.002G172900 OBP32pep, putative, expressed -
8 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
9 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
10 Sobic.010G162900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
11 Sobic.007G092700 - -
12 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.002G195000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@proline-rich protein 6, putative, expressed -
15 Sobic.006G115300 amino acid transporter, putative, expressed -
16 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
17 Sobic.007G035000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
18 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
19 Sobic.003G363100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialyltransferase family domain containing protein, expressed -
20 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -


Gene co-expression network
sample Sobic008G190900 Sobic008G190900 Sobic008G189200 Sobic008G189200 Sobic008G190900--Sobic008G189200 Sobic003G105800 Sobic003G105800 Sobic008G190900--Sobic003G105800 Sobic003G252300 Sobic003G252300 Sobic008G190900--Sobic003G252300 Sobic002G274800 Sobic002G274800 Sobic008G190900--Sobic002G274800 Sobic006G086100 Sobic006G086100 Sobic008G190900--Sobic006G086100 Sobic004G162400 Sobic004G162400 Sobic008G190900--Sobic004G162400 Sobic002G172900 Sobic002G172900 Sobic008G190900--Sobic002G172900 Sobic009G126900 Sobic009G126900 Sobic008G190900--Sobic009G126900 Sobic007G225900 Sobic007G225900 Sobic008G190900--Sobic007G225900 Sobic003G244600 Sobic003G244600 Sobic008G189200--Sobic003G244600 Sobic008G189200--Sobic008G190900 Sobic005G217200 Sobic005G217200 Sobic008G189200--Sobic005G217200 Sobic010G043400 Sobic010G043400 Sobic008G189200--Sobic010G043400 Sobic008G189200--Sobic009G126900 Sobic008G189200--Sobic002G274800 Sobic007G092700 Sobic007G092700 Sobic008G189200--Sobic007G092700 Sobic008G189200--Sobic003G105800 Sobic001G150200 Sobic001G150200 Sobic008G189200--Sobic001G150200 Sobic003G184900 Sobic003G184900 Sobic003G105800--Sobic003G184900 Sobic008G079300 Sobic008G079300 Sobic003G105800--Sobic008G079300 Sobic004G321800 Sobic004G321800 Sobic003G105800--Sobic004G321800 Sobic001G325200 Sobic001G325200 Sobic003G105800--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G105800--Sobic002G304000 Sobic003G105800--Sobic007G225900 Sobic006G100332 Sobic006G100332 Sobic003G105800--Sobic006G100332 Sobic003G087200 Sobic003G087200 Sobic003G105800--Sobic003G087200 Sobic009G226300 Sobic009G226300 Sobic003G105800--Sobic009G226300 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G252300--Sobic003G105800 Sobic006G115300 Sobic006G115300 Sobic003G252300--Sobic006G115300 Sobic003G252300--Sobic008G190900 Sobic003G252300--Sobic004G162400 Sobic003G252300--Sobic008G189200 Sobic003G252300--Sobic007G225900 Sobic001G092000 Sobic001G092000 Sobic003G252300--Sobic001G092000 Sobic002G274800--Sobic010G043400 Sobic002G274800--Sobic007G225900 Sobic002G274800--Sobic003G252300 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic004G124200 Sobic004G124200 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic003G000600 Sobic003G000600 Sobic006G086100--Sobic003G000600 Sobic004G236550 Sobic004G236550 Sobic006G086100--Sobic004G236550 Sobic009G118600 Sobic009G118600 Sobic006G086100--Sobic009G118600 Sobic008G144500 Sobic008G144500 Sobic006G086100--Sobic008G144500 Sobic006G086100--Sobic008G190900 Sobic001G235500 Sobic001G235500 Sobic006G086100--Sobic001G235500 Sobic006G086100--Sobic006G115300 Sobic003G281900 Sobic003G281900 Sobic006G086100--Sobic003G281900 Sobic009G236300 Sobic009G236300 Sobic006G086100--Sobic009G236300 Sobic004G162400--Sobic005G216000 Sobic004G162400--Sobic002G304000 Sobic005G231900 Sobic005G231900 Sobic004G162400--Sobic005G231900 Sobic004G101900 Sobic004G101900 Sobic004G162400--Sobic004G101900 Sobic004G162400--Sobic009G161000 Sobic005G178100 Sobic005G178100 Sobic004G162400--Sobic005G178100 Sobic003G355600 Sobic003G355600 Sobic004G162400--Sobic003G355600 Sobic004G162400--Sobic009G126900 Sobic001G015500 Sobic001G015500 Sobic004G162400--Sobic001G015500 Sobic002G172900--Sobic009G126900 Sobic001G180900 Sobic001G180900 Sobic002G172900--Sobic001G180900 Sobic008G110600 Sobic008G110600 Sobic002G172900--Sobic008G110600 Sobic001G397400 Sobic001G397400 Sobic002G172900--Sobic001G397400 Sobic002G172900--Sobic008G190900 Sobic002G378800 Sobic002G378800 Sobic002G172900--Sobic002G378800 Sobic001G474700 Sobic001G474700 Sobic002G172900--Sobic001G474700 Sobic006G034000 Sobic006G034000 Sobic002G172900--Sobic006G034000 Sobic003G005600 Sobic003G005600 Sobic002G172900--Sobic003G005600 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic009G126900--Sobic004G124200 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic009G126900--Sobic004G101900 Sobic007G225900--Sobic003G105800 Sobic007G225900--Sobic003G184900 Sobic007G225900--Sobic008G079300 Sobic007G225900--Sobic005G178100 Sobic007G225900--Sobic009G161000 Sobic007G225900--Sobic002G274800 Sobic004G320600 Sobic004G320600 Sobic007G225900--Sobic004G320600 Sobic009G034700 Sobic009G034700 Sobic007G225900--Sobic009G034700 Sobic007G225900--Sobic003G087200
Octagon: transcription factors


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