Gene annotation
Transcriptome id Sobic.006G086100.1
Synonym RNA_POL_II_LSRNA_POL_II_LS, RPB1, NRPB1, Sb06g017200, RNA_POL_II_LS
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
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UniProt A0A1B6PKZ9
Pfam -
Panther DB PTHR33725 PTHR33725:SF1
NCBI CDD -
KEGG Orthology K03006; RPB1, DNA-directed RNA polymerase II subunit RPB1
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g35670.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G086100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G000600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY1, expressed -
2 Sobic.004G236550 - -
3 Sobic.009G118600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
4 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
5 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
6 Sobic.001G235500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
7 Sobic.006G115300 amino acid transporter, putative, expressed -
8 Sobic.003G281900 regulator of chromosome condensation, putative, expressed -
9 Sobic.009G236300 lectin-like receptor kinase, putative, expressed -
10 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
11 Sobic.006G086000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
12 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
13 Sobic.002G355200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BTBN16 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed -
14 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
16 Sobic.010G148501 - -
17 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
18 Sobic.005G215766 - -
19 Sobic.007G047700 no apical meristem protein, putative, expressed -
20 Sobic.009G079300 receptor protein kinase-like, putative, expressed -


Gene co-expression network
sample Sobic006G086100 Sobic006G086100 Sobic003G000600 Sobic003G000600 Sobic006G086100--Sobic003G000600 Sobic004G236550 Sobic004G236550 Sobic006G086100--Sobic004G236550 Sobic009G118600 Sobic009G118600 Sobic006G086100--Sobic009G118600 Sobic008G144500 Sobic008G144500 Sobic006G086100--Sobic008G144500 Sobic008G190900 Sobic008G190900 Sobic006G086100--Sobic008G190900 Sobic001G235500 Sobic001G235500 Sobic006G086100--Sobic001G235500 Sobic006G115300 Sobic006G115300 Sobic006G086100--Sobic006G115300 Sobic003G281900 Sobic003G281900 Sobic006G086100--Sobic003G281900 Sobic009G236300 Sobic009G236300 Sobic006G086100--Sobic009G236300 Sobic003G000600--Sobic008G144500 Sobic003G000600--Sobic006G086100 Sobic009G142200 Sobic009G142200 Sobic003G000600--Sobic009G142200 Sobic003G146000 Sobic003G146000 Sobic003G000600--Sobic003G146000 Sobic006G086000 Sobic006G086000 Sobic003G000600--Sobic006G086000 Sobic007G125900 Sobic007G125900 Sobic003G000600--Sobic007G125900 Sobic001G028000 Sobic001G028000 Sobic003G000600--Sobic001G028000 Sobic003G000600--Sobic004G236550 Sobic002G355200 Sobic002G355200 Sobic003G000600--Sobic002G355200 Sobic009G079300 Sobic009G079300 Sobic004G236550--Sobic009G079300 Sobic004G236550--Sobic002G355200 Sobic009G136100 Sobic009G136100 Sobic004G236550--Sobic009G136100 Sobic003G332000 Sobic003G332000 Sobic004G236550--Sobic003G332000 Sobic004G236550--Sobic006G086100 Sobic005G016800 Sobic005G016800 Sobic004G236550--Sobic005G016800 Sobic004G236550--Sobic009G118600 Sobic004G236550--Sobic006G115300 Sobic002G225300 Sobic002G225300 Sobic004G236550--Sobic002G225300 Sobic009G118600--Sobic001G235500 Sobic009G118600--Sobic006G115300 Sobic003G269800 Sobic003G269800 Sobic009G118600--Sobic003G269800 Sobic009G118600--Sobic009G136100 Sobic009G118600--Sobic006G086100 Sobic009G118600--Sobic004G236550 Sobic005G215766 Sobic005G215766 Sobic009G118600--Sobic005G215766 Sobic009G097300 Sobic009G097300 Sobic009G118600--Sobic009G097300 Sobic009G118600--Sobic003G332000 Sobic010G182966 Sobic010G182966 Sobic008G144500--Sobic010G182966 Sobic009G038501 Sobic009G038501 Sobic008G144500--Sobic009G038501 Sobic008G144500--Sobic002G355200 Sobic008G144500--Sobic009G236300 Sobic008G144500--Sobic003G000600 Sobic008G144500--Sobic009G142200 Sobic008G144500--Sobic006G086100 Sobic003G348700 Sobic003G348700 Sobic008G144500--Sobic003G348700 Sobic008G144500--Sobic005G215766 Sobic008G189200 Sobic008G189200 Sobic008G190900--Sobic008G189200 Sobic003G105800 Sobic003G105800 Sobic008G190900--Sobic003G105800 Sobic003G252300 Sobic003G252300 Sobic008G190900--Sobic003G252300 Sobic002G274800 Sobic002G274800 Sobic008G190900--Sobic002G274800 Sobic008G190900--Sobic006G086100 Sobic004G162400 Sobic004G162400 Sobic008G190900--Sobic004G162400 Sobic002G172900 Sobic002G172900 Sobic008G190900--Sobic002G172900 Sobic009G126900 Sobic009G126900 Sobic008G190900--Sobic009G126900 Sobic007G225900 Sobic007G225900 Sobic008G190900--Sobic007G225900 Sobic001G235500--Sobic009G136100 Sobic001G235500--Sobic009G118600 Sobic001G235500--Sobic005G215766 Sobic001G235500--Sobic006G115300 Sobic004G200800 Sobic004G200800 Sobic001G235500--Sobic004G200800 Sobic001G235500--Sobic009G236300 Sobic006G146100 Sobic006G146100 Sobic001G235500--Sobic006G146100 Sobic001G235500--Sobic006G086100 Sobic001G235500--Sobic009G097300 Sobic006G115300--Sobic009G118600 Sobic007G131700 Sobic007G131700 Sobic006G115300--Sobic007G131700 Sobic003G252400 Sobic003G252400 Sobic006G115300--Sobic003G252400 Sobic006G115300--Sobic001G235500 Sobic006G115300--Sobic003G252300 Sobic006G115300--Sobic004G236550 Sobic003G272400 Sobic003G272400 Sobic006G115300--Sobic003G272400 Sobic001G521500 Sobic001G521500 Sobic006G115300--Sobic001G521500 Sobic003G126300 Sobic003G126300 Sobic006G115300--Sobic003G126300 Sobic003G281900--Sobic003G272400 Sobic003G281900--Sobic009G097300 Sobic002G306000 Sobic002G306000 Sobic003G281900--Sobic002G306000 Sobic003G281900--Sobic003G126300 Sobic004G353600 Sobic004G353600 Sobic003G281900--Sobic004G353600 Sobic003G397500 Sobic003G397500 Sobic003G281900--Sobic003G397500 Sobic009G213000 Sobic009G213000 Sobic003G281900--Sobic009G213000 Sobic003G281900--Sobic009G079300 Sobic007G047700 Sobic007G047700 Sobic003G281900--Sobic007G047700 Sobic009G236300--Sobic008G144500 Sobic009G236300--Sobic002G355200 Sobic009G236300--Sobic001G235500 Sobic002G107800 Sobic002G107800 Sobic009G236300--Sobic002G107800 Sobic009G236300--Sobic006G086100 Sobic009G236300--Sobic009G118600 Sobic009G236300--Sobic009G038501 Sobic001G298500 Sobic001G298500 Sobic009G236300--Sobic001G298500 Sobic009G236300--Sobic009G142200
Octagon: transcription factors


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