Gene annotation
Transcriptome id Sobic.010G043400.1
Synonym Sb10g003820
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Z4D4
Pfam -
Panther DB PTHR31315 PTHR31315:SF2
NCBI CDD KOG2789; Putative Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G78420 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g06120.1 : expressed protein
MaizeGDB (Corn) Zm00025a041566 , Zm00025a019986 , Zm00025a049991
Brachypodium KQK19567
Barley HORVU7Hr1G023990.18 , HORVU7Hr1G023990.19 , HORVU7Hr1G023990.14 , HORVU7Hr1G023990.15 , HORVU7Hr1G023990.11 , HORVU7Hr1G023990.8 , HORVU7Hr1G023990.9 , HORVU7Hr1G023990.4 , HORVU4Hr1G034450.19 , HORVU7Hr1G023990.13 , HORVU4Hr1G034450.2 , HORVU4Hr1G034450.3 , HORVU4Hr1G034450.1 , HORVU4Hr1G034450.6 , HORVU4Hr1G034450.7 , HORVU4Hr1G034450.4 , HORVU4Hr1G034450.5 , HORVU4Hr1G034450.8 , HORVU4Hr1G034450.9 , HORVU7Hr1G023990.22 , HORVU7Hr1G023990.21 , HORVU7Hr1G023990.20 , HORVU4Hr1G034450.10 , HORVU4Hr1G034450.11 , HORVU4Hr1G034450.12 , HORVU4Hr1G034450.13 , HORVU4Hr1G034450.14 , HORVU4Hr1G034450.15 , HORVU4Hr1G034450.16 , HORVU4Hr1G034450.17 , HORVU4Hr1G034450.18 , HORVU7Hr1G023990.5 , HORVU7Hr1G023990.6 , HORVU7Hr1G023990.7 , HORVU7Hr1G023990.1 , HORVU7Hr1G023990.2 , HORVU7Hr1G023990.3 , HORVU7Hr1G024070.1 , HORVU4Hr1G034450.25 , HORVU4Hr1G034450.24 , HORVU4Hr1G034450.27 , HORVU4Hr1G034450.26 , HORVU4Hr1G034450.21 , HORVU4Hr1G034450.20 , HORVU4Hr1G034450.23 , HORVU4Hr1G034450.22 , HORVU4Hr1G034450.29 , HORVU4Hr1G034450.28 , HORVU4Hr1G034450.32 , HORVU4Hr1G034450.33 , HORVU4Hr1G034450.30 , HORVU4Hr1G034450.31 , HORVU4Hr1G034450.36 , HORVU4Hr1G034450.34 , HORVU4Hr1G034450.35
Wheat TraesCS7B02G010000 , TraesCS7B02G010000 , TraesCS7D02G107500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G043400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
2 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
3 Sobic.002G009700 AMP-binding domain containing protein, expressed -
4 Sobic.010G018100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
5 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
7 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
8 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
9 Sobic.006G125400 steroid nuclear receptor, ligand-binding, putative, expressed -
10 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
11 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.009G193700 transmembrane protein 56, putative, expressed -
14 Sobic.003G322700 expressed protein -
15 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
16 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
17 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
18 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
19 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
20 Sobic.003G388251 - K01166: ribonuclease T2


Gene co-expression network
sample Sobic010G043400 Sobic010G043400 Sobic009G126900 Sobic009G126900 Sobic010G043400--Sobic009G126900 Sobic004G124200 Sobic004G124200 Sobic010G043400--Sobic004G124200 Sobic002G009700 Sobic002G009700 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic003G355600 Sobic003G355600 Sobic010G043400--Sobic003G355600 Sobic006G271200 Sobic006G271200 Sobic010G043400--Sobic006G271200 Sobic010G107000 Sobic010G107000 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic003G388251 Sobic003G388251 Sobic004G124200--Sobic003G388251 Sobic004G124200--Sobic004G101900 Sobic001G325200 Sobic001G325200 Sobic004G124200--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic004G124200--Sobic001G015500 Sobic009G161000 Sobic009G161000 Sobic004G124200--Sobic009G161000 Sobic004G124200--Sobic010G043400 Sobic006G199000 Sobic006G199000 Sobic004G124200--Sobic006G199000 Sobic007G068100 Sobic007G068100 Sobic004G124200--Sobic007G068100 Sobic005G178100 Sobic005G178100 Sobic004G124200--Sobic005G178100 Sobic002G009700--Sobic003G355600 Sobic002G009700--Sobic009G126900 Sobic002G009700--Sobic010G043400 Sobic008G062200 Sobic008G062200 Sobic002G009700--Sobic008G062200 Sobic003G322700 Sobic003G322700 Sobic002G009700--Sobic003G322700 Sobic002G009700--Sobic003G329400 Sobic002G009700--Sobic006G204900 Sobic009G193700 Sobic009G193700 Sobic002G009700--Sobic009G193700 Sobic007G024700 Sobic007G024700 Sobic002G009700--Sobic007G024700 Sobic010G018100--Sobic010G043400 Sobic001G222200 Sobic001G222200 Sobic010G018100--Sobic001G222200 Sobic002G274800 Sobic002G274800 Sobic010G018100--Sobic002G274800 Sobic010G018100--Sobic004G124200 Sobic001G320200 Sobic001G320200 Sobic010G018100--Sobic001G320200 Sobic003G363100 Sobic003G363100 Sobic010G018100--Sobic003G363100 Sobic008G189200 Sobic008G189200 Sobic010G018100--Sobic008G189200 Sobic010G018100--Sobic003G388251 Sobic002G215800 Sobic002G215800 Sobic010G018100--Sobic002G215800 Sobic003G355600--Sobic008G062200 Sobic003G355600--Sobic001G325200 Sobic002G304000 Sobic002G304000 Sobic003G355600--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic003G355600--Sobic009G226300 Sobic003G355600--Sobic010G107000 Sobic003G355600--Sobic006G199000 Sobic003G355600--Sobic002G009700 Sobic003G355600--Sobic009G193700 Sobic003G355600--Sobic004G101900 Sobic006G271200--Sobic001G003000 Sobic006G237900 Sobic006G237900 Sobic006G271200--Sobic006G237900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic009G211400 Sobic009G211400 Sobic010G107000--Sobic009G211400 Sobic010G107000--Sobic001G325200 Sobic010G107000--Sobic009G193700 Sobic010G107000--Sobic003G355600 Sobic003G219600 Sobic003G219600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic009G029600 Sobic009G029600 Sobic010G107000--Sobic009G029600 Sobic010G107000--Sobic009G226300 Sobic003G138200 Sobic003G138200 Sobic010G107000--Sobic003G138200 Sobic006G204900--Sobic003G322700 Sobic001G207400 Sobic001G207400 Sobic006G204900--Sobic001G207400 Sobic004G269200 Sobic004G269200 Sobic006G204900--Sobic004G269200 Sobic009G133500 Sobic009G133500 Sobic006G204900--Sobic009G133500 Sobic010G001500 Sobic010G001500 Sobic006G204900--Sobic010G001500 Sobic004G068400 Sobic004G068400 Sobic006G204900--Sobic004G068400 Sobic004G355000 Sobic004G355000 Sobic006G204900--Sobic004G355000 Sobic003G320700 Sobic003G320700 Sobic006G204900--Sobic003G320700 Sobic002G430000 Sobic002G430000 Sobic006G204900--Sobic002G430000 Sobic006G125400--Sobic006G204900 Sobic006G125400--Sobic010G043400 Sobic006G125400--Sobic004G269200 Sobic006G125400--Sobic010G107000 Sobic006G125400--Sobic001G207400 Sobic006G125400--Sobic003G355600 Sobic006G125400--Sobic006G271200 Sobic006G214200 Sobic006G214200 Sobic006G125400--Sobic006G214200 Sobic006G125400--Sobic002G009700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.