Gene annotation
Transcriptome id Sobic.003G005600.2,Sobic.003G005600.3,Sobic.003G005600.1
Synonym PFU1, Sb03g000670, UBC25
Functional annotation ubiquitin conjugating enzyme protein, putative, expressed
UniProt A0A1B6Q0M5
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF151
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10581; ubiquitin-conjugating enzyme E2 O
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15355 : ubiquitin-conjugating enzyme 25
RAP-DB (Rice) LOC_Os01g13280.1 : ubiquitin conjugating enzyme protein, putative, expressed
MaizeGDB (Corn) Zm00025a035164 , Zm00025a018741 , Zm00025a002237 , Zm00025a022805
Brachypodium KQK03457 , KQK03456 , KQK03455 , KQK03454
Barley HORVU2Hr1G062530.4 , HORVU2Hr1G062530.3 , HORVU3Hr1G031890.10 , HORVU3Hr1G031890.11 , HORVU3Hr1G031890.14 , HORVU3Hr1G031890.12 , HORVU3Hr1G031890.13 , HORVU5Hr1G000190.3 , HORVU3Hr1G109730.1 , HORVU1Hr1G090980.4 , HORVU1Hr1G090980.3 , HORVU1Hr1G090980.2 , HORVU1Hr1G090980.1 , HORVU3Hr1G031890.8 , HORVU3Hr1G031890.9 , HORVU3Hr1G031890.6 , HORVU3Hr1G031890.7 , HORVU3Hr1G031890.4 , HORVU3Hr1G031890.5 , HORVU3Hr1G031890.2 , HORVU3Hr1G031890.3 , HORVU3Hr1G031890.1
Wheat TraesCS3B02G183600 , TraesCS3B02G183600 , TraesCS3D02G164800 , TraesCS3D02G164800 , TraesCS3A02G157200 , TraesCS3A02G157200 , TraesCS3A02G157200 , TraesCS3A02G157200 , TraesCS3A02G157300 , TraesCS3A02G157300
Populus -


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cDNA sequences
Sobic.003G005600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
2 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
3 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
4 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
5 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
6 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
7 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
8 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G064700 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
10 Sobic.001G474700 expressed protein -
11 Sobic.001G440600 expressed protein -
12 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
13 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
14 Sobic.002G009700 AMP-binding domain containing protein, expressed -
15 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
16 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
17 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
18 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
19 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
20 Sobic.003G388251 - K01166: ribonuclease T2


Gene co-expression network
sample Sobic003G005600 Sobic003G005600 Sobic009G126900 Sobic009G126900 Sobic003G005600--Sobic009G126900 Sobic002G304000 Sobic002G304000 Sobic003G005600--Sobic002G304000 Sobic001G003000 Sobic001G003000 Sobic003G005600--Sobic001G003000 Sobic003G329400 Sobic003G329400 Sobic003G005600--Sobic003G329400 Sobic006G271200 Sobic006G271200 Sobic003G005600--Sobic006G271200 Sobic004G101900 Sobic004G101900 Sobic003G005600--Sobic004G101900 Sobic008G062200 Sobic008G062200 Sobic003G005600--Sobic008G062200 Sobic010G043400 Sobic010G043400 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic009G126900--Sobic003G005600 Sobic009G126900--Sobic003G329400 Sobic009G126900--Sobic004G101900 Sobic009G226300 Sobic009G226300 Sobic002G304000--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic003G148800 Sobic003G148800 Sobic002G304000--Sobic003G148800 Sobic002G215700 Sobic002G215700 Sobic002G304000--Sobic002G215700 Sobic002G304000--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic002G304000--Sobic001G325200 Sobic003G355600 Sobic003G355600 Sobic002G304000--Sobic003G355600 Sobic003G105800 Sobic003G105800 Sobic002G304000--Sobic003G105800 Sobic001G003000--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic001G003000--Sobic001G089800 Sobic001G003000--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic001G003000--Sobic004G102400 Sobic006G237900 Sobic006G237900 Sobic001G003000--Sobic006G237900 Sobic001G003000--Sobic003G005600 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic006G271200--Sobic001G089800 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic004G101900--Sobic001G325200 Sobic004G101900--Sobic009G226300 Sobic004G101900--Sobic009G054500 Sobic004G101900--Sobic008G062200 Sobic004G101900--Sobic003G148800 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500 Sobic008G062200--Sobic003G355600 Sobic008G062200--Sobic009G226300 Sobic008G062200--Sobic002G304000 Sobic008G062200--Sobic009G054500 Sobic004G260000 Sobic004G260000 Sobic008G062200--Sobic004G260000 Sobic008G062200--Sobic001G325200 Sobic008G062200--Sobic004G101900 Sobic008G062200--Sobic009G193700 Sobic008G062200--Sobic003G148800 Sobic010G043400--Sobic009G126900 Sobic010G043400--Sobic004G124200 Sobic010G043400--Sobic002G009700 Sobic010G018100 Sobic010G018100 Sobic010G043400--Sobic010G018100 Sobic010G043400--Sobic003G355600 Sobic010G043400--Sobic006G271200 Sobic010G043400--Sobic010G107000 Sobic006G204900 Sobic006G204900 Sobic010G043400--Sobic006G204900 Sobic006G125400 Sobic006G125400 Sobic010G043400--Sobic006G125400 Sobic010G064700--Sobic003G005600 Sobic002G132000 Sobic002G132000 Sobic010G064700--Sobic002G132000 Sobic010G064700--Sobic006G271200 Sobic001G474700 Sobic001G474700 Sobic010G064700--Sobic001G474700 Sobic010G064700--Sobic009G126900 Sobic010G064700--Sobic003G329400 Sobic006G115600 Sobic006G115600 Sobic010G064700--Sobic006G115600 Sobic010G064700--Sobic010G072800 Sobic004G264400 Sobic004G264400 Sobic010G064700--Sobic004G264400
Octagon: transcription factors


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