Gene annotation
Transcriptome id Sobic.001G427100.1,Sobic.001G427100.2
Synonym Sb01g040130
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
mitochondrial carrier protein, putative, expressed
UniProt C5WQ52
Pfam PF00153
Panther DB PTHR24089 PTHR24089:SF351
NCBI CDD KOG0769; Predicted mitochondrial carrier protein
KEGG Orthology K13354; SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39970 : Mitochondrial substrate carrier family protein
RAP-DB (Rice) LOC_Os03g15860.1 : mitochondrial carrier protein, putative, expressed
MaizeGDB (Corn) Zm00025a001730
Brachypodium KQK22432
Barley HORVU4Hr1G060990.9 , HORVU4Hr1G060990.2 , HORVU4Hr1G060990.3 , HORVU4Hr1G060990.1 , HORVU4Hr1G060990.6 , HORVU4Hr1G060990.7 , HORVU4Hr1G060990.4 , HORVU4Hr1G060990.5 , HORVU4Hr1G060990.10 , HORVU4Hr1G060990.11 , HORVU4Hr1G060990.12 , HORVU4Hr1G060990.13 , HORVU4Hr1G060990.14 , HORVU4Hr1G060990.16
Wheat TraesCS4D02G214400 , TraesCS4D02G214400 , TraesCS4B02G213700 , TraesCS4B02G213700 , TraesCS4A02G091000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G427100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
2 Sobic.009G121100 expressed protein -
3 Sobic.001G474700 expressed protein -
4 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
5 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
6 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
7 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
8 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
9 Sobic.001G373200 lipase precursor, putative, expressed -
10 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
11 Sobic.007G041400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
12 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
13 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
14 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
15 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
17 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
18 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
19 Sobic.003G195500 SEY1, putative, expressed -
20 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)


Gene co-expression network
sample Sobic001G427100 Sobic001G427100 Sobic003G305200 Sobic003G305200 Sobic001G427100--Sobic003G305200 Sobic009G121100 Sobic009G121100 Sobic001G427100--Sobic009G121100 Sobic001G474700 Sobic001G474700 Sobic001G427100--Sobic001G474700 Sobic004G295800 Sobic004G295800 Sobic001G427100--Sobic004G295800 Sobic001G156100 Sobic001G156100 Sobic001G427100--Sobic001G156100 Sobic009G126900 Sobic009G126900 Sobic001G427100--Sobic009G126900 Sobic003G005600 Sobic003G005600 Sobic001G427100--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic001G427100--Sobic003G329400 Sobic001G373200 Sobic001G373200 Sobic001G427100--Sobic001G373200 Sobic007G024700 Sobic007G024700 Sobic003G305200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic003G305200--Sobic010G130200 Sobic003G305200--Sobic001G427100 Sobic006G083600 Sobic006G083600 Sobic003G305200--Sobic006G083600 Sobic002G132000 Sobic002G132000 Sobic003G305200--Sobic002G132000 Sobic003G305200--Sobic004G295800 Sobic009G094300 Sobic009G094300 Sobic003G305200--Sobic009G094300 Sobic002G270500 Sobic002G270500 Sobic003G305200--Sobic002G270500 Sobic003G305200--Sobic003G329400 Sobic006G214500 Sobic006G214500 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic001G443900 Sobic001G443900 Sobic009G121100--Sobic001G443900 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic009G121100--Sobic004G295800 Sobic002G303000 Sobic002G303000 Sobic009G121100--Sobic002G303000 Sobic001G474700--Sobic009G126900 Sobic001G474700--Sobic001G427100 Sobic001G474700--Sobic001G373200 Sobic003G195500 Sobic003G195500 Sobic001G474700--Sobic003G195500 Sobic001G474700--Sobic003G005600 Sobic001G474700--Sobic004G295800 Sobic003G036800 Sobic003G036800 Sobic001G474700--Sobic003G036800 Sobic001G474700--Sobic007G024700 Sobic001G474700--Sobic002G132000 Sobic008G191100 Sobic008G191100 Sobic004G295800--Sobic008G191100 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic004G295800--Sobic009G121100 Sobic004G006200 Sobic004G006200 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic004G295800--Sobic001G373200 Sobic004G295800--Sobic003G407300 Sobic001G290000 Sobic001G290000 Sobic004G295800--Sobic001G290000 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic009G126900--Sobic003G005600 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic003G005600--Sobic009G126900 Sobic002G304000 Sobic002G304000 Sobic003G005600--Sobic002G304000 Sobic003G005600--Sobic001G003000 Sobic003G005600--Sobic003G329400 Sobic003G005600--Sobic006G271200 Sobic003G005600--Sobic004G101900 Sobic008G062200 Sobic008G062200 Sobic003G005600--Sobic008G062200 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic001G373200--Sobic003G407300 Sobic001G373200--Sobic009G121100 Sobic001G373200--Sobic003G019100 Sobic001G373200--Sobic004G295800 Sobic001G373200--Sobic007G024700 Sobic001G373200--Sobic006G214500 Sobic002G179900 Sobic002G179900 Sobic001G373200--Sobic002G179900 Sobic001G373200--Sobic001G156100 Sobic009G249200 Sobic009G249200 Sobic001G373200--Sobic009G249200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.