Gene annotation
Transcriptome id Sobic.007G041400.1
Synonym Sb07g003450
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
DUF1336 domain containing protein, expressed
UniProt A0A1B6PFG8
Pfam PF07059
Panther DB PTHR12136 PTHR12136:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G06050 : Protein of unknown function (DUF1336)
RAP-DB (Rice) LOC_Os08g05640.2 : DUF1336 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a055203
Brachypodium -
Barley HORVU7Hr1G072050.3 , HORVU7Hr1G072050.2 , HORVU7Hr1G072050.1 , HORVU7Hr1G072050.4
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G041400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G488500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"OsFBK12(Ortholog in rice:Chen et al., 2013)"(PubMedID : 31659851)@OsFBK12 - F-box domain and kelch repeat containing protein, expressed -
2 Sobic.005G079900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@F-box domain containing protein, expressed -
3 Sobic.004G101900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@citrate synthase, putative, expressed K01647: CS, citrate synthase
4 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
5 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
6 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
7 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
9 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
10 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
11 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
12 Sobic.003G226200 neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
13 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
14 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
15 Sobic.003G138200 expressed protein -
16 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
17 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
18 Sobic.005G152100 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
19 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
20 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4


Gene co-expression network
sample Sobic007G041400 Sobic007G041400 Sobic001G488500 Sobic001G488500 Sobic007G041400--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic007G041400--Sobic005G079900 Sobic004G101900 Sobic004G101900 Sobic007G041400--Sobic004G101900 Sobic010G107000 Sobic010G107000 Sobic007G041400--Sobic010G107000 Sobic002G215700 Sobic002G215700 Sobic007G041400--Sobic002G215700 Sobic003G329400 Sobic003G329400 Sobic007G041400--Sobic003G329400 Sobic009G211400 Sobic009G211400 Sobic007G041400--Sobic009G211400 Sobic001G427100 Sobic001G427100 Sobic007G041400--Sobic001G427100 Sobic003G005600 Sobic003G005600 Sobic007G041400--Sobic003G005600 Sobic004G236600 Sobic004G236600 Sobic001G488500--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic001G488500--Sobic005G152100 Sobic004G246200 Sobic004G246200 Sobic001G488500--Sobic004G246200 Sobic005G231900 Sobic005G231900 Sobic001G488500--Sobic005G231900 Sobic002G322900 Sobic002G322900 Sobic001G488500--Sobic002G322900 Sobic004G255000 Sobic004G255000 Sobic001G488500--Sobic004G255000 Sobic001G488500--Sobic005G079900 Sobic010G206000 Sobic010G206000 Sobic001G488500--Sobic010G206000 Sobic005G215900 Sobic005G215900 Sobic001G488500--Sobic005G215900 Sobic005G079900--Sobic004G101900 Sobic009G234800 Sobic009G234800 Sobic005G079900--Sobic009G234800 Sobic005G079900--Sobic005G231900 Sobic003G303300 Sobic003G303300 Sobic005G079900--Sobic003G303300 Sobic005G079900--Sobic001G488500 Sobic001G512800 Sobic001G512800 Sobic005G079900--Sobic001G512800 Sobic005G079900--Sobic002G215700 Sobic007G068100 Sobic007G068100 Sobic005G079900--Sobic007G068100 Sobic005G079900--Sobic004G246200 Sobic002G304000 Sobic002G304000 Sobic004G101900--Sobic002G304000 Sobic004G101900--Sobic002G215700 Sobic001G325200 Sobic001G325200 Sobic004G101900--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic004G101900--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic004G101900--Sobic009G054500 Sobic008G062200 Sobic008G062200 Sobic004G101900--Sobic008G062200 Sobic003G148800 Sobic003G148800 Sobic004G101900--Sobic003G148800 Sobic004G124200 Sobic004G124200 Sobic004G101900--Sobic004G124200 Sobic001G015500 Sobic001G015500 Sobic004G101900--Sobic001G015500 Sobic010G107000--Sobic009G211400 Sobic010G107000--Sobic001G325200 Sobic009G193700 Sobic009G193700 Sobic010G107000--Sobic009G193700 Sobic003G355600 Sobic003G355600 Sobic010G107000--Sobic003G355600 Sobic003G219600 Sobic003G219600 Sobic010G107000--Sobic003G219600 Sobic001G150200 Sobic001G150200 Sobic010G107000--Sobic001G150200 Sobic009G029600 Sobic009G029600 Sobic010G107000--Sobic009G029600 Sobic010G107000--Sobic009G226300 Sobic003G138200 Sobic003G138200 Sobic010G107000--Sobic003G138200 Sobic001G227800 Sobic001G227800 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic006G100332 Sobic006G100332 Sobic002G215700--Sobic006G100332 Sobic002G215700--Sobic003G138200 Sobic002G215700--Sobic003G148800 Sobic005G018500 Sobic005G018500 Sobic002G215700--Sobic005G018500 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic009G211400--Sobic003G219600 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic009G211400--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G211400--Sobic009G193700 Sobic009G211400--Sobic005G018500 Sobic003G305200 Sobic003G305200 Sobic001G427100--Sobic003G305200 Sobic009G121100 Sobic009G121100 Sobic001G427100--Sobic009G121100 Sobic001G474700 Sobic001G474700 Sobic001G427100--Sobic001G474700 Sobic004G295800 Sobic004G295800 Sobic001G427100--Sobic004G295800 Sobic001G156100 Sobic001G156100 Sobic001G427100--Sobic001G156100 Sobic009G126900 Sobic009G126900 Sobic001G427100--Sobic009G126900 Sobic001G427100--Sobic003G005600 Sobic001G427100--Sobic003G329400 Sobic001G373200 Sobic001G373200 Sobic001G427100--Sobic001G373200 Sobic003G005600--Sobic009G126900 Sobic003G005600--Sobic002G304000 Sobic001G003000 Sobic001G003000 Sobic003G005600--Sobic001G003000 Sobic003G005600--Sobic003G329400 Sobic006G271200 Sobic006G271200 Sobic003G005600--Sobic006G271200 Sobic003G005600--Sobic004G101900 Sobic003G005600--Sobic008G062200 Sobic010G043400 Sobic010G043400 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.