Gene annotation
Transcriptome id Sobic.009G229800.1
Synonym Dw1, DWARF1, DW1;dwarf1
Functional annotation Uncharacterized gene family (PubMedID : 29126242)
"Causal gene for dw1, a putative membrane protein of unknown function" (PubMedID : 26963094)
expressed protein
UniProt A0A1B6P9X8
Pfam -
Panther DB PTHR31798:SF3 PTHR31798
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76660 : -
RAP-DB (Rice) LOC_Os01g01390.2 : expressed protein
MaizeGDB (Corn) Zm00025a044538 , Zm00025a036590
Brachypodium PNT77677 , KQK22371 , KQK22370 , KQK22368 , KQK22369 , KQK22367
Barley -
Wheat TraesCS4A02G095000 , TraesCS4A02G095000 , TraesCS4A02G095000
Populus -


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cDNA sequences
Sobic.009G229800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
2 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
3 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
4 Sobic.001G373200 lipase precursor, putative, expressed -
5 Sobic.009G121100 expressed protein -
6 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
7 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
8 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
9 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
10 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
11 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
12 Sobic.006G058600 AML1, putative, expressed -
13 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
14 Sobic.001G507300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G330900 Positive cytokinine regulator(PubMedID : 30367619)@two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
16 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
17 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
18 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
19 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
20 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1


Gene co-expression network
sample Sobic009G229800 Sobic009G229800 Sobic003G407300 Sobic003G407300 Sobic009G229800--Sobic003G407300 Sobic001G156100 Sobic001G156100 Sobic009G229800--Sobic001G156100 Sobic004G060900 Sobic004G060900 Sobic009G229800--Sobic004G060900 Sobic001G373200 Sobic001G373200 Sobic009G229800--Sobic001G373200 Sobic009G121100 Sobic009G121100 Sobic009G229800--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic009G229800--Sobic001G443900 Sobic002G419800 Sobic002G419800 Sobic009G229800--Sobic002G419800 Sobic009G057300 Sobic009G057300 Sobic009G229800--Sobic009G057300 Sobic007G172400 Sobic007G172400 Sobic009G229800--Sobic007G172400 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic003G407300--Sobic003G019100 Sobic006G214500 Sobic006G214500 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic004G295800 Sobic004G295800 Sobic003G407300--Sobic004G295800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic007G024700 Sobic007G024700 Sobic003G407300--Sobic007G024700 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic001G474500 Sobic001G474500 Sobic004G060900--Sobic001G474500 Sobic004G321800 Sobic004G321800 Sobic004G060900--Sobic004G321800 Sobic007G068100 Sobic007G068100 Sobic004G060900--Sobic007G068100 Sobic003G148800 Sobic003G148800 Sobic004G060900--Sobic003G148800 Sobic001G325200 Sobic001G325200 Sobic004G060900--Sobic001G325200 Sobic002G324000 Sobic002G324000 Sobic004G060900--Sobic002G324000 Sobic004G060900--Sobic009G229800 Sobic003G428400 Sobic003G428400 Sobic004G060900--Sobic003G428400 Sobic004G060900--Sobic009G057300 Sobic001G373200--Sobic003G407300 Sobic001G373200--Sobic009G121100 Sobic001G373200--Sobic003G019100 Sobic001G373200--Sobic004G295800 Sobic001G373200--Sobic007G024700 Sobic001G373200--Sobic006G214500 Sobic002G179900 Sobic002G179900 Sobic001G373200--Sobic002G179900 Sobic001G373200--Sobic001G156100 Sobic009G249200 Sobic009G249200 Sobic001G373200--Sobic009G249200 Sobic009G121100--Sobic006G214500 Sobic009G121100--Sobic003G407300 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic009G121100--Sobic001G443900 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic009G121100--Sobic004G295800 Sobic009G121100--Sobic002G303000 Sobic001G443900--Sobic006G214500 Sobic001G443900--Sobic009G121100 Sobic003G005800 Sobic003G005800 Sobic001G443900--Sobic003G005800 Sobic001G443900--Sobic001G373200 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G443900--Sobic001G447500 Sobic001G443900--Sobic001G156100 Sobic001G443900--Sobic009G229800 Sobic004G331100 Sobic004G331100 Sobic002G419800--Sobic004G331100 Sobic001G050200 Sobic001G050200 Sobic002G419800--Sobic001G050200 Sobic009G027300 Sobic009G027300 Sobic002G419800--Sobic009G027300 Sobic007G075400 Sobic007G075400 Sobic002G419800--Sobic007G075400 Sobic001G290100 Sobic001G290100 Sobic002G419800--Sobic001G290100 Sobic002G419800--Sobic007G172400 Sobic001G289600 Sobic001G289600 Sobic002G419800--Sobic001G289600 Sobic002G419800--Sobic007G024700 Sobic007G105100 Sobic007G105100 Sobic002G419800--Sobic007G105100 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic003G388251 Sobic003G388251 Sobic009G057300--Sobic003G388251 Sobic003G329400 Sobic003G329400 Sobic009G057300--Sobic003G329400 Sobic003G354400 Sobic003G354400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic001G322700 Sobic001G322700 Sobic009G057300--Sobic001G322700 Sobic001G058700 Sobic001G058700 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic001G050600 Sobic001G050600 Sobic007G172400--Sobic001G050600 Sobic004G347400 Sobic004G347400 Sobic007G172400--Sobic004G347400 Sobic007G172400--Sobic002G419800 Sobic001G219900 Sobic001G219900 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic003G408600 Sobic003G408600 Sobic007G172400--Sobic003G408600
Octagon: transcription factors


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