Gene annotation
Transcriptome id Sobic.001G507300.1,Sobic.001G507300.2
Synonym Sb01g047345
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QQL1 , A0A1B6QQK4
Pfam PF12552 PF12552 PF14309
Panther DB PTHR21726 PTHR21726:SF34
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28760 : Protein of unknown function (DUF3741)
RAP-DB (Rice) LOC_Os03g04990.1 : expressed protein
MaizeGDB (Corn) Zm00025a053400 , Zm00025a000580
Brachypodium KQK23699
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G507300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
2 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
3 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
4 Sobic.001G050200 expressed protein -
5 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
6 Sobic.001G290100 expressed protein -
7 Sobic.001G373200 lipase precursor, putative, expressed -
8 Sobic.007G026500 OsFBK21 - F-box domain and kelch repeat containing protein, expressed -
9 Sobic.004G355000 SAC9, putative, expressed -
10 Sobic.009G121100 expressed protein -
11 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
12 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
13 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
14 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
15 Sobic.002G427050 - -
16 Sobic.008G191100 nodulin, putative, expressed -
17 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
18 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
19 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
20 Sobic.003G019100 KIN, antigenic determinant of recA protein, putative, expressed K13102: DNA/RNA-binding protein KIN17


Gene co-expression network
sample Sobic001G507300 Sobic001G507300 Sobic003G407300 Sobic003G407300 Sobic001G507300--Sobic003G407300 Sobic004G295800 Sobic004G295800 Sobic001G507300--Sobic004G295800 Sobic002G315200 Sobic002G315200 Sobic001G507300--Sobic002G315200 Sobic001G050200 Sobic001G050200 Sobic001G507300--Sobic001G050200 Sobic002G419800 Sobic002G419800 Sobic001G507300--Sobic002G419800 Sobic001G290100 Sobic001G290100 Sobic001G507300--Sobic001G290100 Sobic001G373200 Sobic001G373200 Sobic001G507300--Sobic001G373200 Sobic007G026500 Sobic007G026500 Sobic001G507300--Sobic007G026500 Sobic004G355000 Sobic004G355000 Sobic001G507300--Sobic004G355000 Sobic009G121100 Sobic009G121100 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic003G407300--Sobic003G019100 Sobic006G214500 Sobic006G214500 Sobic003G407300--Sobic006G214500 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic009G229800 Sobic009G229800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic007G024700 Sobic007G024700 Sobic003G407300--Sobic007G024700 Sobic008G191100 Sobic008G191100 Sobic004G295800--Sobic008G191100 Sobic002G132000 Sobic002G132000 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic004G295800--Sobic009G121100 Sobic004G006200 Sobic004G006200 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic004G295800--Sobic001G373200 Sobic004G295800--Sobic003G407300 Sobic001G290000 Sobic001G290000 Sobic004G295800--Sobic001G290000 Sobic010G153700 Sobic010G153700 Sobic002G315200--Sobic010G153700 Sobic002G006900 Sobic002G006900 Sobic002G315200--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic002G315200--Sobic001G071400 Sobic008G047800 Sobic008G047800 Sobic002G315200--Sobic008G047800 Sobic001G220300 Sobic001G220300 Sobic002G315200--Sobic001G220300 Sobic001G512700 Sobic001G512700 Sobic002G315200--Sobic001G512700 Sobic009G191000 Sobic009G191000 Sobic002G315200--Sobic009G191000 Sobic002G315200--Sobic001G290100 Sobic001G497300 Sobic001G497300 Sobic002G315200--Sobic001G497300 Sobic001G050200--Sobic002G419800 Sobic003G422500 Sobic003G422500 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic001G050200--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic004G331100 Sobic004G331100 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400 Sobic002G419800--Sobic004G331100 Sobic002G419800--Sobic001G050200 Sobic002G419800--Sobic009G027300 Sobic002G419800--Sobic007G075400 Sobic002G419800--Sobic001G290100 Sobic007G172400 Sobic007G172400 Sobic002G419800--Sobic007G172400 Sobic001G289600 Sobic001G289600 Sobic002G419800--Sobic001G289600 Sobic002G419800--Sobic007G024700 Sobic007G105100 Sobic007G105100 Sobic002G419800--Sobic007G105100 Sobic001G290100--Sobic003G101400 Sobic009G026500 Sobic009G026500 Sobic001G290100--Sobic009G026500 Sobic001G290100--Sobic004G331100 Sobic001G290100--Sobic002G419800 Sobic010G201500 Sobic010G201500 Sobic001G290100--Sobic010G201500 Sobic009G166300 Sobic009G166300 Sobic001G290100--Sobic009G166300 Sobic001G290100--Sobic002G315200 Sobic002G071500 Sobic002G071500 Sobic001G290100--Sobic002G071500 Sobic003G372700 Sobic003G372700 Sobic001G290100--Sobic003G372700 Sobic001G373200--Sobic003G407300 Sobic001G373200--Sobic009G121100 Sobic001G373200--Sobic003G019100 Sobic001G373200--Sobic004G295800 Sobic001G373200--Sobic007G024700 Sobic001G373200--Sobic006G214500 Sobic002G179900 Sobic002G179900 Sobic001G373200--Sobic002G179900 Sobic001G156100 Sobic001G156100 Sobic001G373200--Sobic001G156100 Sobic009G249200 Sobic009G249200 Sobic001G373200--Sobic009G249200 Sobic003G093300 Sobic003G093300 Sobic007G026500--Sobic003G093300 Sobic007G026500--Sobic004G295800 Sobic007G026500--Sobic009G121100 Sobic007G026500--Sobic004G021100 Sobic007G026500--Sobic003G407300 Sobic004G052900 Sobic004G052900 Sobic007G026500--Sobic004G052900 Sobic002G340100 Sobic002G340100 Sobic007G026500--Sobic002G340100 Sobic001G154100 Sobic001G154100 Sobic007G026500--Sobic001G154100 Sobic001G253700 Sobic001G253700 Sobic007G026500--Sobic001G253700 Sobic001G207400 Sobic001G207400 Sobic004G355000--Sobic001G207400 Sobic002G430000 Sobic002G430000 Sobic004G355000--Sobic002G430000 Sobic001G248300 Sobic001G248300 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G329400 Sobic004G329400 Sobic004G355000--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic004G355000--Sobic005G157000 Sobic003G322700 Sobic003G322700 Sobic004G355000--Sobic003G322700 Sobic004G113400 Sobic004G113400 Sobic004G355000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G355000--Sobic009G010600
Octagon: transcription factors


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