Gene annotation
Transcriptome id Sobic.009G121100.2
Synonym
Functional annotation expressed protein
UniProt A0A1Z5R397
Pfam PF07839
Panther DB PTHR33923 PTHR33923:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005516; calmodulin binding


Orthologs (automatic annotation)
TAIR AT2G38800 : Plant calmodulin-binding protein-related
RAP-DB (Rice) LOC_Os05g31690.1 : expressed protein
MaizeGDB (Corn) Zm00025a043514
Brachypodium KQK06567
Barley HORVU1Hr1G057240.5 , HORVU1Hr1G057240.1 , HORVU1Hr1G057240.2
Wheat TraesCS1D02G239300
Populus PNT52290


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
2 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
3 Sobic.003G019100 KIN, antigenic determinant of recA protein, putative, expressed K13102: DNA/RNA-binding protein KIN17
4 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
5 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
6 Sobic.001G373200 lipase precursor, putative, expressed -
7 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
8 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
9 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
10 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
11 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
12 Sobic.007G026500 OsFBK21 - F-box domain and kelch repeat containing protein, expressed -
13 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
15 Sobic.009G249200 transmembrane protein, putative, expressed -
16 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
17 Sobic.006G138400 regulatory subunit, putative, expressed -
18 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
19 Sobic.003G093300 - -
20 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -


Gene co-expression network
sample Sobic009G121100 Sobic009G121100 Sobic006G214500 Sobic006G214500 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic001G156100 Sobic001G156100 Sobic009G121100--Sobic001G156100 Sobic001G443900 Sobic001G443900 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic002G303000 Sobic002G303000 Sobic009G121100--Sobic002G303000 Sobic006G214500--Sobic009G121100 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic008G160700 Sobic008G160700 Sobic006G214500--Sobic008G160700 Sobic006G214500--Sobic010G078100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G407300--Sobic003G019100 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic009G229800 Sobic009G229800 Sobic003G407300--Sobic009G229800 Sobic003G407300--Sobic002G303000 Sobic007G024700 Sobic007G024700 Sobic003G407300--Sobic007G024700 Sobic003G019100--Sobic009G121100 Sobic003G019100--Sobic001G373200 Sobic003G019100--Sobic003G407300 Sobic003G019100--Sobic004G295800 Sobic004G021100 Sobic004G021100 Sobic003G019100--Sobic004G021100 Sobic003G019100--Sobic006G214500 Sobic003G019100--Sobic009G249200 Sobic001G290000 Sobic001G290000 Sobic003G019100--Sobic001G290000 Sobic001G409600 Sobic001G409600 Sobic003G019100--Sobic001G409600 Sobic001G156100--Sobic009G121100 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic001G156100--Sobic009G229800 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic001G443900--Sobic006G214500 Sobic001G443900--Sobic009G121100 Sobic003G005800 Sobic003G005800 Sobic001G443900--Sobic003G005800 Sobic001G443900--Sobic001G373200 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G443900--Sobic001G447500 Sobic001G443900--Sobic001G156100 Sobic001G443900--Sobic009G229800 Sobic001G373200--Sobic003G407300 Sobic001G373200--Sobic009G121100 Sobic001G373200--Sobic003G019100 Sobic001G373200--Sobic004G295800 Sobic001G373200--Sobic007G024700 Sobic001G373200--Sobic006G214500 Sobic002G179900 Sobic002G179900 Sobic001G373200--Sobic002G179900 Sobic001G373200--Sobic001G156100 Sobic001G373200--Sobic009G249200 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic010G078100--Sobic009G121100 Sobic010G078100--Sobic006G214500 Sobic010G078100--Sobic009G027000 Sobic001G359400 Sobic001G359400 Sobic010G078100--Sobic001G359400 Sobic001G373100 Sobic001G373100 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic010G078100--Sobic004G295800 Sobic008G191100 Sobic008G191100 Sobic004G295800--Sobic008G191100 Sobic002G132000 Sobic002G132000 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic004G295800--Sobic009G121100 Sobic004G006200 Sobic004G006200 Sobic004G295800--Sobic004G006200 Sobic004G295800--Sobic004G021100 Sobic004G295800--Sobic001G373200 Sobic004G295800--Sobic003G407300 Sobic004G295800--Sobic001G290000 Sobic002G303000--Sobic010G078100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic002G303000--Sobic003G407300 Sobic009G040700 Sobic009G040700 Sobic002G303000--Sobic009G040700 Sobic005G007800 Sobic005G007800 Sobic002G303000--Sobic005G007800 Sobic004G196700 Sobic004G196700 Sobic002G303000--Sobic004G196700 Sobic009G235900 Sobic009G235900 Sobic002G303000--Sobic009G235900 Sobic008G024600 Sobic008G024600 Sobic002G303000--Sobic008G024600
Octagon: transcription factors


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