Gene annotation
Transcriptome id Sobic.004G330900.1
Synonym ARR12, RR12, Positive cytokinine regulator, Sb04g035980
Functional annotation Positive cytokinine regulator (PubMedID : 30367619)
two-component response regulator, putative, expressed
UniProt C5XUH1
Pfam PF00249 PF00072
Panther DB PTHR26402 PTHR26402:SF423
NCBI CDD KOG1601; GATA-4/5/6 transcription factors
KEGG Orthology K14491; two-component response regulator ARR-B family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT2G25180 : response regulator 12
RAP-DB (Rice) LOC_Os02g55320.1 : two-component response regulator, putative, expressed
MaizeGDB (Corn) Zm00025a022475 , Zm00025a006616
Brachypodium KQK01151 , KQK01152 , KQK19286 , PNT76356
Barley HORVU6Hr1G085560.4 , HORVU6Hr1G085560.5 , HORVU6Hr1G085560.6 , HORVU6Hr1G085560.7 , HORVU6Hr1G085560.3 , HORVU6Hr1G085560.8 , HORVU6Hr1G068570.6 , HORVU6Hr1G068570.7 , HORVU6Hr1G068570.4 , HORVU6Hr1G068570.5 , HORVU6Hr1G068570.2 , HORVU6Hr1G068570.3 , HORVU6Hr1G068570.1 , HORVU6Hr1G068570.8 , HORVU6Hr1G068570.9 , HORVU6Hr1G068570.21 , HORVU6Hr1G068570.20 , HORVU6Hr1G068570.23 , HORVU6Hr1G085560.10 , HORVU6Hr1G085560.11 , HORVU7Hr1G030050.4 , HORVU7Hr1G030050.6 , HORVU7Hr1G030050.1 , HORVU7Hr1G030050.3 , HORVU7Hr1G030050.2 , HORVU6Hr1G068570.14 , HORVU6Hr1G068570.15 , HORVU6Hr1G068570.16 , HORVU6Hr1G068570.17 , HORVU6Hr1G068570.10 , HORVU6Hr1G068570.11 , HORVU6Hr1G068570.12 , HORVU6Hr1G068570.13
Wheat TraesCS7B02G049200 , TraesCS7D02G148200 , TraesCS6A02G359200 , TraesCS6B02G392000 , TraesCS6D02G342200 , TraesCS4A02G060000 , TraesCS7A02G146500 , TraesCS3D02G331500 , TraesCS7A02G146700
Populus PNS93878 , PNT32413


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
2 Sobic.009G121100 expressed protein -
3 Sobic.004G282400 rhoGAP domain containing protein, expressed -
4 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
5 Sobic.007G202600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio domain-containing protein PPD1, putative, expressed K17943: pumilio RNA-binding family
6 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
7 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
8 Sobic.006G058600 AML1, putative, expressed -
9 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
10 Sobic.005G225400 expressed protein -
11 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
12 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
13 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
14 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
15 Sobic.010G189000 protein with a conserved N-terminal region, putative, expressed -
16 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
17 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
18 Sobic.006G114500 per1-like family protein, putative, expressed -
19 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
20 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase


Gene co-expression network
sample Sobic004G330900 Sobic004G330900 Sobic003G145900 Sobic003G145900 Sobic004G330900--Sobic003G145900 Sobic009G121100 Sobic009G121100 Sobic004G330900--Sobic009G121100 Sobic004G282400 Sobic004G282400 Sobic004G330900--Sobic004G282400 Sobic001G221100 Sobic001G221100 Sobic004G330900--Sobic001G221100 Sobic007G202600 Sobic007G202600 Sobic004G330900--Sobic007G202600 Sobic002G303000 Sobic002G303000 Sobic004G330900--Sobic002G303000 Sobic009G229800 Sobic009G229800 Sobic004G330900--Sobic009G229800 Sobic006G058600 Sobic006G058600 Sobic004G330900--Sobic006G058600 Sobic001G443900 Sobic001G443900 Sobic004G330900--Sobic001G443900 Sobic009G235900 Sobic009G235900 Sobic003G145900--Sobic009G235900 Sobic008G160700 Sobic008G160700 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic003G145900--Sobic004G330900 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic006G214500 Sobic006G214500 Sobic009G121100--Sobic006G214500 Sobic003G407300 Sobic003G407300 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic001G156100 Sobic001G156100 Sobic009G121100--Sobic001G156100 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic009G121100--Sobic002G303000 Sobic010G189000 Sobic010G189000 Sobic004G282400--Sobic010G189000 Sobic004G350100 Sobic004G350100 Sobic004G282400--Sobic004G350100 Sobic004G282400--Sobic004G330900 Sobic009G056800 Sobic009G056800 Sobic004G282400--Sobic009G056800 Sobic004G205600 Sobic004G205600 Sobic004G282400--Sobic004G205600 Sobic006G173100 Sobic006G173100 Sobic004G282400--Sobic006G173100 Sobic004G282400--Sobic006G114500 Sobic004G282400--Sobic007G202600 Sobic002G423200 Sobic002G423200 Sobic004G282400--Sobic002G423200 Sobic001G039700 Sobic001G039700 Sobic001G221100--Sobic001G039700 Sobic009G032300 Sobic009G032300 Sobic001G221100--Sobic009G032300 Sobic001G221100--Sobic010G042900 Sobic001G221100--Sobic003G145900 Sobic004G027100 Sobic004G027100 Sobic001G221100--Sobic004G027100 Sobic004G034400 Sobic004G034400 Sobic001G221100--Sobic004G034400 Sobic001G221100--Sobic004G330900 Sobic005G014950 Sobic005G014950 Sobic001G221100--Sobic005G014950 Sobic002G197100 Sobic002G197100 Sobic001G221100--Sobic002G197100 Sobic010G083000 Sobic010G083000 Sobic007G202600--Sobic010G083000 Sobic007G041500 Sobic007G041500 Sobic007G202600--Sobic007G041500 Sobic002G189400 Sobic002G189400 Sobic007G202600--Sobic002G189400 Sobic007G202600--Sobic004G330900 Sobic007G202600--Sobic004G282400 Sobic010G188400 Sobic010G188400 Sobic007G202600--Sobic010G188400 Sobic002G152200 Sobic002G152200 Sobic007G202600--Sobic002G152200 Sobic009G193300 Sobic009G193300 Sobic007G202600--Sobic009G193300 Sobic007G202600--Sobic006G114500 Sobic002G303000--Sobic010G078100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic002G303000--Sobic003G407300 Sobic009G040700 Sobic009G040700 Sobic002G303000--Sobic009G040700 Sobic002G303000--Sobic005G007800 Sobic004G196700 Sobic004G196700 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic008G024600 Sobic008G024600 Sobic002G303000--Sobic008G024600 Sobic009G229800--Sobic003G407300 Sobic009G229800--Sobic001G156100 Sobic004G060900 Sobic004G060900 Sobic009G229800--Sobic004G060900 Sobic009G229800--Sobic001G373200 Sobic009G229800--Sobic009G121100 Sobic009G229800--Sobic001G443900 Sobic002G419800 Sobic002G419800 Sobic009G229800--Sobic002G419800 Sobic009G057300 Sobic009G057300 Sobic009G229800--Sobic009G057300 Sobic007G172400 Sobic007G172400 Sobic009G229800--Sobic007G172400 Sobic006G058600--Sobic009G229800 Sobic006G058600--Sobic004G330900 Sobic003G401200 Sobic003G401200 Sobic006G058600--Sobic003G401200 Sobic001G447500 Sobic001G447500 Sobic006G058600--Sobic001G447500 Sobic003G329400 Sobic003G329400 Sobic006G058600--Sobic003G329400 Sobic006G058600--Sobic001G443900 Sobic002G215700 Sobic002G215700 Sobic006G058600--Sobic002G215700 Sobic001G427100 Sobic001G427100 Sobic006G058600--Sobic001G427100 Sobic003G148800 Sobic003G148800 Sobic006G058600--Sobic003G148800 Sobic001G443900--Sobic006G214500 Sobic001G443900--Sobic009G121100 Sobic003G005800 Sobic003G005800 Sobic001G443900--Sobic003G005800 Sobic001G443900--Sobic001G373200 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G443900--Sobic001G447500 Sobic001G443900--Sobic001G156100 Sobic001G443900--Sobic009G229800
Octagon: transcription factors


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