Gene annotation
Transcriptome id Sobic.004G282400.1
Synonym Sb04g031870
Functional annotation rhoGAP domain containing protein, expressed
UniProt C5Y0Z1
Pfam PF00786 PF00620
Panther DB PTHR23177 PTHR23177:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction


Orthologs (automatic annotation)
TAIR AT2G46710 : Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
RAP-DB (Rice) LOC_Os02g45600.1 : rhoGAP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010122 , Zm00025a021511
Brachypodium KQJ92205 , KQJ92169 , KQK00770
Barley HORVU5Hr1G042400.1 , HORVU6Hr1G065800.3 , HORVU6Hr1G065800.11 , HORVU6Hr1G065800.10 , HORVU6Hr1G065800.12 , HORVU6Hr1G065800.5 , HORVU6Hr1G065800.4 , HORVU6Hr1G065800.7 , HORVU6Hr1G065800.1 , HORVU6Hr1G065800.2 , HORVU6Hr1G065800.9 , HORVU6Hr1G065800.8 , HORVU5Hr1G042400.2
Wheat TraesCS6D02G239200 , TraesCS2A02G397000 , TraesCS6A02G257900 , TraesCS6A02G257900 , TraesCS6B02G267300
Populus -


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cDNA sequences
Sobic.004G282400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G189000 protein with a conserved N-terminal region, putative, expressed -
2 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
3 Sobic.004G330900 Positive cytokinine regulator(PubMedID : 30367619)@two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
4 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
5 Sobic.004G205600 bromodomain domain containing protein, expressed -
6 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
7 Sobic.006G114500 per1-like family protein, putative, expressed -
8 Sobic.007G202600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio domain-containing protein PPD1, putative, expressed K17943: pumilio RNA-binding family
9 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
10 Sobic.006G183800 KH domain containing protein, putative, expressed K13095: splicing factor 1
11 Sobic.006G252700 protein kinase domain containing protein, expressed -
12 Sobic.004G007300 expressed protein -
13 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
14 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
15 Sobic.005G143400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
16 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
17 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
18 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
19 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
20 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA


Gene co-expression network
sample Sobic004G282400 Sobic004G282400 Sobic010G189000 Sobic010G189000 Sobic004G282400--Sobic010G189000 Sobic004G350100 Sobic004G350100 Sobic004G282400--Sobic004G350100 Sobic004G330900 Sobic004G330900 Sobic004G282400--Sobic004G330900 Sobic009G056800 Sobic009G056800 Sobic004G282400--Sobic009G056800 Sobic004G205600 Sobic004G205600 Sobic004G282400--Sobic004G205600 Sobic006G173100 Sobic006G173100 Sobic004G282400--Sobic006G173100 Sobic006G114500 Sobic006G114500 Sobic004G282400--Sobic006G114500 Sobic007G202600 Sobic007G202600 Sobic004G282400--Sobic007G202600 Sobic002G423200 Sobic002G423200 Sobic004G282400--Sobic002G423200 Sobic006G028200 Sobic006G028200 Sobic010G189000--Sobic006G028200 Sobic007G079200 Sobic007G079200 Sobic010G189000--Sobic007G079200 Sobic001G094000 Sobic001G094000 Sobic010G189000--Sobic001G094000 Sobic009G040700 Sobic009G040700 Sobic010G189000--Sobic009G040700 Sobic006G183800 Sobic006G183800 Sobic010G189000--Sobic006G183800 Sobic002G288000 Sobic002G288000 Sobic010G189000--Sobic002G288000 Sobic010G189000--Sobic004G282400 Sobic006G046700 Sobic006G046700 Sobic010G189000--Sobic006G046700 Sobic004G061900 Sobic004G061900 Sobic010G189000--Sobic004G061900 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic003G145900 Sobic003G145900 Sobic004G330900--Sobic003G145900 Sobic009G121100 Sobic009G121100 Sobic004G330900--Sobic009G121100 Sobic004G330900--Sobic004G282400 Sobic001G221100 Sobic001G221100 Sobic004G330900--Sobic001G221100 Sobic004G330900--Sobic007G202600 Sobic002G303000 Sobic002G303000 Sobic004G330900--Sobic002G303000 Sobic009G229800 Sobic009G229800 Sobic004G330900--Sobic009G229800 Sobic006G058600 Sobic006G058600 Sobic004G330900--Sobic006G058600 Sobic001G443900 Sobic001G443900 Sobic004G330900--Sobic001G443900 Sobic004G021100 Sobic004G021100 Sobic009G056800--Sobic004G021100 Sobic009G056800--Sobic006G173100 Sobic009G056800--Sobic004G350100 Sobic002G388200 Sobic002G388200 Sobic009G056800--Sobic002G388200 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic001G142100 Sobic001G142100 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic006G114500--Sobic004G350100 Sobic006G114500--Sobic004G021100 Sobic004G339100 Sobic004G339100 Sobic006G114500--Sobic004G339100 Sobic006G114500--Sobic004G205600 Sobic001G201400 Sobic001G201400 Sobic006G114500--Sobic001G201400 Sobic001G466700 Sobic001G466700 Sobic006G114500--Sobic001G466700 Sobic009G257800 Sobic009G257800 Sobic006G114500--Sobic009G257800 Sobic010G083000 Sobic010G083000 Sobic007G202600--Sobic010G083000 Sobic007G041500 Sobic007G041500 Sobic007G202600--Sobic007G041500 Sobic002G189400 Sobic002G189400 Sobic007G202600--Sobic002G189400 Sobic007G202600--Sobic004G330900 Sobic007G202600--Sobic004G282400 Sobic010G188400 Sobic010G188400 Sobic007G202600--Sobic010G188400 Sobic002G152200 Sobic002G152200 Sobic007G202600--Sobic002G152200 Sobic009G193300 Sobic009G193300 Sobic007G202600--Sobic009G193300 Sobic007G202600--Sobic006G114500 Sobic002G259800 Sobic002G259800 Sobic002G423200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic002G423200--Sobic005G133500 Sobic004G246100 Sobic004G246100 Sobic002G423200--Sobic004G246100 Sobic006G248500 Sobic006G248500 Sobic002G423200--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G423200--Sobic008G127400 Sobic010G236400 Sobic010G236400 Sobic002G423200--Sobic010G236400 Sobic003G353600 Sobic003G353600 Sobic002G423200--Sobic003G353600 Sobic001G138400 Sobic001G138400 Sobic002G423200--Sobic001G138400 Sobic006G138000 Sobic006G138000 Sobic002G423200--Sobic006G138000
Octagon: transcription factors


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