Gene annotation
Transcriptome id Sobic.007G202600.2,Sobic.007G202600.1
Synonym Sb07g026995, PUM6, APUM6
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pumilio domain-containing protein PPD1, putative, expressed
UniProt A0A1B6PIU0 , A0A1B6PIT9
Pfam PF00806
Panther DB PTHR12537 PTHR12537:SF74
NCBI CDD KOG1488; Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)
KEGG Orthology K17943; pumilio RNA-binding family
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G20250 : pumilio 5
RAP-DB (Rice) LOC_Os08g40830.3,LOC_Os08g40830.2 : pumilio domain-containing protein PPD1, putative, expressed
MaizeGDB (Corn) Zm00025a030347 , Zm00025a005162
Brachypodium KQJ99004 , KQJ99005 , KQJ99006 , KQJ99007 , PNT68428
Barley HORVU5Hr1G074660.1 , HORVU5Hr1G074660.2 , HORVU5Hr1G074660.3 , HORVU5Hr1G074660.4 , HORVU5Hr1G074660.6 , HORVU5Hr1G074660.7 , HORVU5Hr1G074660.8 , HORVU5Hr1G074660.9 , HORVU7Hr1G052140.3 , HORVU7Hr1G052140.2 , HORVU7Hr1G052140.1 , HORVU7Hr1G052140.5 , HORVU7Hr1G052140.4
Wheat TraesCS7B02G138200 , TraesCS7B02G138200 , TraesCS7B02G138200 , TraesCS7B02G138200 , TraesCS7B02G138200 , TraesCS7B02G138200 , TraesCS5D02G282300 , TraesCS7A02G252700 , TraesCS7A02G252700 , TraesCS7A02G252700 , TraesCS7A02G252700 , TraesCS7A02G252700 , TraesCS7D02G251300 , TraesCS7D02G251300 , TraesCS7D02G251300 , TraesCS7D02G251300 , TraesCS5B02G274400 , TraesCS5A02G274700 , TraesCS7D02G251300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G083000 expressed protein -
2 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
3 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
4 Sobic.004G330900 Positive cytokinine regulator(PubMedID : 30367619)@two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
5 Sobic.004G282400 rhoGAP domain containing protein, expressed -
6 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
7 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
8 Sobic.009G193300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
9 Sobic.006G114500 per1-like family protein, putative, expressed -
10 Sobic.009G148300 expressed protein -
11 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
12 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
13 Sobic.001G017600 protein of unknown function containing protein, expressed -
14 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
15 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
16 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
17 Sobic.008G133400 unc-93 homolog A, putative, expressed -
18 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
19 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
20 Sobic.004G325400 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant


Gene co-expression network
sample Sobic007G202600 Sobic007G202600 Sobic010G083000 Sobic010G083000 Sobic007G202600--Sobic010G083000 Sobic007G041500 Sobic007G041500 Sobic007G202600--Sobic007G041500 Sobic002G189400 Sobic002G189400 Sobic007G202600--Sobic002G189400 Sobic004G330900 Sobic004G330900 Sobic007G202600--Sobic004G330900 Sobic004G282400 Sobic004G282400 Sobic007G202600--Sobic004G282400 Sobic010G188400 Sobic010G188400 Sobic007G202600--Sobic010G188400 Sobic002G152200 Sobic002G152200 Sobic007G202600--Sobic002G152200 Sobic009G193300 Sobic009G193300 Sobic007G202600--Sobic009G193300 Sobic006G114500 Sobic006G114500 Sobic007G202600--Sobic006G114500 Sobic010G083000--Sobic007G202600 Sobic003G353600 Sobic003G353600 Sobic010G083000--Sobic003G353600 Sobic002G076000 Sobic002G076000 Sobic010G083000--Sobic002G076000 Sobic002G423200 Sobic002G423200 Sobic010G083000--Sobic002G423200 Sobic002G288000 Sobic002G288000 Sobic010G083000--Sobic002G288000 Sobic008G133400 Sobic008G133400 Sobic010G083000--Sobic008G133400 Sobic010G083000--Sobic007G041500 Sobic009G257800 Sobic009G257800 Sobic010G083000--Sobic009G257800 Sobic006G217200 Sobic006G217200 Sobic010G083000--Sobic006G217200 Sobic007G119200 Sobic007G119200 Sobic007G041500--Sobic007G119200 Sobic009G148300 Sobic009G148300 Sobic007G041500--Sobic009G148300 Sobic010G034000 Sobic010G034000 Sobic007G041500--Sobic010G034000 Sobic008G153000 Sobic008G153000 Sobic007G041500--Sobic008G153000 Sobic001G091400 Sobic001G091400 Sobic007G041500--Sobic001G091400 Sobic004G246100 Sobic004G246100 Sobic007G041500--Sobic004G246100 Sobic004G072100 Sobic004G072100 Sobic007G041500--Sobic004G072100 Sobic010G116600 Sobic010G116600 Sobic007G041500--Sobic010G116600 Sobic002G071500 Sobic002G071500 Sobic007G041500--Sobic002G071500 Sobic010G228500 Sobic010G228500 Sobic002G189400--Sobic010G228500 Sobic004G339100 Sobic004G339100 Sobic002G189400--Sobic004G339100 Sobic006G083600 Sobic006G083600 Sobic002G189400--Sobic006G083600 Sobic002G189400--Sobic009G148300 Sobic002G189400--Sobic007G202600 Sobic004G113400 Sobic004G113400 Sobic002G189400--Sobic004G113400 Sobic004G127700 Sobic004G127700 Sobic002G189400--Sobic004G127700 Sobic008G099800 Sobic008G099800 Sobic002G189400--Sobic008G099800 Sobic002G111600 Sobic002G111600 Sobic002G189400--Sobic002G111600 Sobic003G145900 Sobic003G145900 Sobic004G330900--Sobic003G145900 Sobic009G121100 Sobic009G121100 Sobic004G330900--Sobic009G121100 Sobic004G330900--Sobic004G282400 Sobic001G221100 Sobic001G221100 Sobic004G330900--Sobic001G221100 Sobic004G330900--Sobic007G202600 Sobic002G303000 Sobic002G303000 Sobic004G330900--Sobic002G303000 Sobic009G229800 Sobic009G229800 Sobic004G330900--Sobic009G229800 Sobic006G058600 Sobic006G058600 Sobic004G330900--Sobic006G058600 Sobic001G443900 Sobic001G443900 Sobic004G330900--Sobic001G443900 Sobic010G189000 Sobic010G189000 Sobic004G282400--Sobic010G189000 Sobic004G350100 Sobic004G350100 Sobic004G282400--Sobic004G350100 Sobic004G282400--Sobic004G330900 Sobic009G056800 Sobic009G056800 Sobic004G282400--Sobic009G056800 Sobic004G205600 Sobic004G205600 Sobic004G282400--Sobic004G205600 Sobic006G173100 Sobic006G173100 Sobic004G282400--Sobic006G173100 Sobic004G282400--Sobic006G114500 Sobic004G282400--Sobic007G202600 Sobic004G282400--Sobic002G423200 Sobic010G274500 Sobic010G274500 Sobic010G188400--Sobic010G274500 Sobic010G188400--Sobic007G202600 Sobic008G147700 Sobic008G147700 Sobic010G188400--Sobic008G147700 Sobic001G120300 Sobic001G120300 Sobic010G188400--Sobic001G120300 Sobic001G427100 Sobic001G427100 Sobic010G188400--Sobic001G427100 Sobic010G188400--Sobic003G145900 Sobic003G305200 Sobic003G305200 Sobic010G188400--Sobic003G305200 Sobic010G188400--Sobic009G148300 Sobic010G188400--Sobic002G303000 Sobic001G156100 Sobic001G156100 Sobic002G152200--Sobic001G156100 Sobic002G152200--Sobic009G229800 Sobic002G152200--Sobic007G202600 Sobic002G152200--Sobic001G427100 Sobic006G138400 Sobic006G138400 Sobic002G152200--Sobic006G138400 Sobic002G152200--Sobic003G145900 Sobic002G152200--Sobic009G121100 Sobic002G152200--Sobic001G443900 Sobic002G152200--Sobic004G330900 Sobic009G193300--Sobic007G202600 Sobic009G193300--Sobic007G041500 Sobic003G355000 Sobic003G355000 Sobic009G193300--Sobic003G355000 Sobic009G193300--Sobic007G119200 Sobic003G005200 Sobic003G005200 Sobic009G193300--Sobic003G005200 Sobic001G408200 Sobic001G408200 Sobic009G193300--Sobic001G408200 Sobic005G143400 Sobic005G143400 Sobic009G193300--Sobic005G143400 Sobic001G517500 Sobic001G517500 Sobic009G193300--Sobic001G517500 Sobic006G252700 Sobic006G252700 Sobic009G193300--Sobic006G252700 Sobic001G142100 Sobic001G142100 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic006G114500--Sobic004G350100 Sobic004G021100 Sobic004G021100 Sobic006G114500--Sobic004G021100 Sobic006G114500--Sobic004G339100 Sobic006G114500--Sobic004G205600 Sobic001G201400 Sobic001G201400 Sobic006G114500--Sobic001G201400 Sobic001G466700 Sobic001G466700 Sobic006G114500--Sobic001G466700 Sobic006G114500--Sobic009G257800
Octagon: transcription factors


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