Gene annotation
Transcriptome id Sobic.001G017600.6,Sobic.001G017600.7,Sobic.001G017600.10,Sobic.001G017600.11,Sobic.001G017600.5,Sobic.001G017600.1,Sobic.001G017600.9,Sobic.001G017600.8
Synonym Sb01g001710
Functional annotation protein of unknown function containing protein, expressed
UniProt A0A1B6QGX4 , A0A1Z5S3Y5 , A0A1B6QGX0 , A0A1Z5S4G0 , A0A1B6QGZ6 , A0A1B6QH02
Pfam PF04266
Panther DB PTHR34204 PTHR34204:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03320 : RNA-binding ASCH domain protein
RAP-DB (Rice) LOC_Os11g16420.1,LOC_Os11g16420.2 : protein of unknown function containing protein, expressed
MaizeGDB (Corn) Zm00025a008976
Brachypodium -
Barley -
Wheat TraesCS4B02G083900 , TraesCS4B02G083900 , TraesCS4D02G081800 , TraesCS4D02G081800 , TraesCS4D02G081800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G133400 unc-93 homolog A, putative, expressed -
2 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
3 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
4 Sobic.005G182200 NBS-LRR disease resistance protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
5 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
6 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
7 Sobic.010G256800 - -
8 Sobic.001G498200 YT521-B-like family domain containing protein, expressed -
9 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
10 Sobic.009G005100 - -
11 Sobic.002G164800 SET domain containing protein, expressed K11423: [histone H3]-dimethyl-L-lysine36 N-methyltransferase
12 Sobic.002G058400 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
13 Sobic.010G106900 NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed -
14 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
15 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
16 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
17 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
18 Sobic.002G076000 transporter-related, putative, expressed -
19 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
20 Sobic.009G213100 beta-galactosidase 8 precursor, putative, expressed K12309: GLB1, beta-galactosidase


Gene co-expression network
sample Sobic001G017600 Sobic001G017600 Sobic008G133400 Sobic008G133400 Sobic001G017600--Sobic008G133400 Sobic008G083000 Sobic008G083000 Sobic001G017600--Sobic008G083000 Sobic007G061700 Sobic007G061700 Sobic001G017600--Sobic007G061700 Sobic005G182200 Sobic005G182200 Sobic001G017600--Sobic005G182200 Sobic009G257800 Sobic009G257800 Sobic001G017600--Sobic009G257800 Sobic003G442000 Sobic003G442000 Sobic001G017600--Sobic003G442000 Sobic010G256800 Sobic010G256800 Sobic001G017600--Sobic010G256800 Sobic001G498200 Sobic001G498200 Sobic001G017600--Sobic001G498200 Sobic002G158700 Sobic002G158700 Sobic001G017600--Sobic002G158700 Sobic008G133400--Sobic001G017600 Sobic008G133400--Sobic010G256800 Sobic008G133400--Sobic009G257800 Sobic009G062900 Sobic009G062900 Sobic008G133400--Sobic009G062900 Sobic009G040700 Sobic009G040700 Sobic008G133400--Sobic009G040700 Sobic008G133400--Sobic008G083000 Sobic005G084100 Sobic005G084100 Sobic008G133400--Sobic005G084100 Sobic004G057400 Sobic004G057400 Sobic008G133400--Sobic004G057400 Sobic004G325400 Sobic004G325400 Sobic008G133400--Sobic004G325400 Sobic008G083000--Sobic005G084100 Sobic010G279700 Sobic010G279700 Sobic008G083000--Sobic010G279700 Sobic008G131000 Sobic008G131000 Sobic008G083000--Sobic008G131000 Sobic001G281600 Sobic001G281600 Sobic008G083000--Sobic001G281600 Sobic009G050900 Sobic009G050900 Sobic008G083000--Sobic009G050900 Sobic003G401100 Sobic003G401100 Sobic008G083000--Sobic003G401100 Sobic008G011100 Sobic008G011100 Sobic008G083000--Sobic008G011100 Sobic004G018300 Sobic004G018300 Sobic008G083000--Sobic004G018300 Sobic007G000800 Sobic007G000800 Sobic008G083000--Sobic007G000800 Sobic008G149800 Sobic008G149800 Sobic007G061700--Sobic008G149800 Sobic007G061700--Sobic002G158700 Sobic004G246100 Sobic004G246100 Sobic007G061700--Sobic004G246100 Sobic003G401000 Sobic003G401000 Sobic007G061700--Sobic003G401000 Sobic006G046700 Sobic006G046700 Sobic007G061700--Sobic006G046700 Sobic001G542700 Sobic001G542700 Sobic007G061700--Sobic001G542700 Sobic008G153000 Sobic008G153000 Sobic007G061700--Sobic008G153000 Sobic001G544200 Sobic001G544200 Sobic007G061700--Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic007G061700--Sobic004G031700 Sobic005G182200--Sobic001G017600 Sobic005G182200--Sobic001G498200 Sobic007G031800 Sobic007G031800 Sobic005G182200--Sobic007G031800 Sobic004G285800 Sobic004G285800 Sobic005G182200--Sobic004G285800 Sobic009G225200 Sobic009G225200 Sobic005G182200--Sobic009G225200 Sobic010G256932 Sobic010G256932 Sobic005G182200--Sobic010G256932 Sobic009G117300 Sobic009G117300 Sobic005G182200--Sobic009G117300 Sobic002G188500 Sobic002G188500 Sobic005G182200--Sobic002G188500 Sobic010G057400 Sobic010G057400 Sobic005G182200--Sobic010G057400 Sobic009G257800--Sobic003G401000 Sobic006G267300 Sobic006G267300 Sobic009G257800--Sobic006G267300 Sobic003G081000 Sobic003G081000 Sobic009G257800--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic009G257800--Sobic004G283000 Sobic009G257800--Sobic004G057400 Sobic002G090800 Sobic002G090800 Sobic009G257800--Sobic002G090800 Sobic006G252700 Sobic006G252700 Sobic009G257800--Sobic006G252700 Sobic009G257800--Sobic004G325400 Sobic001G090400 Sobic001G090400 Sobic009G257800--Sobic001G090400 Sobic005G009200 Sobic005G009200 Sobic003G442000--Sobic005G009200 Sobic005G015900 Sobic005G015900 Sobic003G442000--Sobic005G015900 Sobic003G442000--Sobic004G018300 Sobic003G258900 Sobic003G258900 Sobic003G442000--Sobic003G258900 Sobic010G202600 Sobic010G202600 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic003G442000--Sobic002G158700 Sobic003G442000--Sobic001G090400 Sobic002G301500 Sobic002G301500 Sobic010G256800--Sobic002G301500 Sobic010G021000 Sobic010G021000 Sobic010G256800--Sobic010G021000 Sobic010G256800--Sobic008G133400 Sobic010G084000 Sobic010G084000 Sobic010G256800--Sobic010G084000 Sobic010G256800--Sobic001G017600 Sobic010G256800--Sobic010G256932 Sobic003G370200 Sobic003G370200 Sobic010G256800--Sobic003G370200 Sobic010G256800--Sobic008G083000 Sobic009G178300 Sobic009G178300 Sobic010G256800--Sobic009G178300 Sobic004G256600 Sobic004G256600 Sobic001G498200--Sobic004G256600 Sobic001G028900 Sobic001G028900 Sobic001G498200--Sobic001G028900 Sobic010G248600 Sobic010G248600 Sobic001G498200--Sobic010G248600 Sobic010G270300 Sobic010G270300 Sobic001G498200--Sobic010G270300 Sobic003G113200 Sobic003G113200 Sobic001G498200--Sobic003G113200 Sobic005G015100 Sobic005G015100 Sobic001G498200--Sobic005G015100 Sobic006G128900 Sobic006G128900 Sobic001G498200--Sobic006G128900 Sobic001G498200--Sobic009G117300 Sobic001G498200--Sobic007G031800 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic002G158700--Sobic007G000800 Sobic002G158700--Sobic007G061700 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000
Octagon: transcription factors


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