Gene annotation
Transcriptome id Sobic.010G188400.3,Sobic.010G188400.1,Sobic.010G188400.2
Synonym Sb10g023860, RGLG2
Functional annotation copine-1, putative, expressed
UniProt A0A194YK31 , A0A194YK58
Pfam PF07002 PF13920 PF07002
Panther DB PTHR10857 PTHR10857:SF37
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K16280; E3 ubiquitin-protein ligase RGLG
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G14420 : RING domain ligase2
RAP-DB (Rice) LOC_Os06g40650.1,LOC_Os06g40650.4,LOC_Os06g40650.2 : copine-1, putative, expressed
MaizeGDB (Corn) Zm00025a042165 , Zm00025a051350
Brachypodium KQK17718 , KQK17717 , KQK17716
Barley -
Wheat TraesCS7D02G377500 , TraesCS7A02G381200 , TraesCS7B02G283100 , TraesCS7B02G283200 , TraesCS7A02G381300 , TraesCS7D02G377600
Populus PNS97110 , PNT10252 , PNT10253 , PNT10254 , PNT01148 , PNT01147 , PNT28965


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cDNA sequences
Sobic.010G188400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G274500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@catalase isozyme B, putative, expressed K03781: katE, CAT, catB, catalase
2 Sobic.007G202600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio domain-containing protein PPD1, putative, expressed K17943: pumilio RNA-binding family
3 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
4 Sobic.001G120300 phytanoyl-CoA dioxygenase, putative, expressed K00477: phytanoyl-CoA hydroxylase
5 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
6 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
7 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
8 Sobic.009G148300 expressed protein -
9 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
10 Sobic.001G394600 expressed protein -
11 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
12 Sobic.002G189400 AMP-binding enzyme, putative, expressed -
13 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
14 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
15 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
16 Sobic.006G114500 per1-like family protein, putative, expressed -
17 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
20 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2


Gene co-expression network
sample Sobic010G188400 Sobic010G188400 Sobic010G274500 Sobic010G274500 Sobic010G188400--Sobic010G274500 Sobic007G202600 Sobic007G202600 Sobic010G188400--Sobic007G202600 Sobic008G147700 Sobic008G147700 Sobic010G188400--Sobic008G147700 Sobic001G120300 Sobic001G120300 Sobic010G188400--Sobic001G120300 Sobic001G427100 Sobic001G427100 Sobic010G188400--Sobic001G427100 Sobic003G145900 Sobic003G145900 Sobic010G188400--Sobic003G145900 Sobic003G305200 Sobic003G305200 Sobic010G188400--Sobic003G305200 Sobic009G148300 Sobic009G148300 Sobic010G188400--Sobic009G148300 Sobic002G303000 Sobic002G303000 Sobic010G188400--Sobic002G303000 Sobic010G274500--Sobic010G188400 Sobic002G376300 Sobic002G376300 Sobic010G274500--Sobic002G376300 Sobic009G177400 Sobic009G177400 Sobic010G274500--Sobic009G177400 Sobic008G156300 Sobic008G156300 Sobic010G274500--Sobic008G156300 Sobic002G392700 Sobic002G392700 Sobic010G274500--Sobic002G392700 Sobic005G229166 Sobic005G229166 Sobic010G274500--Sobic005G229166 Sobic010G274500--Sobic001G120300 Sobic002G189400 Sobic002G189400 Sobic010G274500--Sobic002G189400 Sobic010G274500--Sobic003G145900 Sobic010G083000 Sobic010G083000 Sobic007G202600--Sobic010G083000 Sobic007G041500 Sobic007G041500 Sobic007G202600--Sobic007G041500 Sobic007G202600--Sobic002G189400 Sobic004G330900 Sobic004G330900 Sobic007G202600--Sobic004G330900 Sobic004G282400 Sobic004G282400 Sobic007G202600--Sobic004G282400 Sobic007G202600--Sobic010G188400 Sobic002G152200 Sobic002G152200 Sobic007G202600--Sobic002G152200 Sobic009G193300 Sobic009G193300 Sobic007G202600--Sobic009G193300 Sobic006G114500 Sobic006G114500 Sobic007G202600--Sobic006G114500 Sobic003G354400 Sobic003G354400 Sobic008G147700--Sobic003G354400 Sobic003G436300 Sobic003G436300 Sobic008G147700--Sobic003G436300 Sobic008G147700--Sobic010G188400 Sobic008G147700--Sobic001G120300 Sobic005G203800 Sobic005G203800 Sobic008G147700--Sobic005G203800 Sobic006G083600 Sobic006G083600 Sobic008G147700--Sobic006G083600 Sobic005G091600 Sobic005G091600 Sobic008G147700--Sobic005G091600 Sobic010G130200 Sobic010G130200 Sobic008G147700--Sobic010G130200 Sobic006G176600 Sobic006G176600 Sobic008G147700--Sobic006G176600 Sobic001G120300--Sobic003G354400 Sobic001G394600 Sobic001G394600 Sobic001G120300--Sobic001G394600 Sobic004G127700 Sobic004G127700 Sobic001G120300--Sobic004G127700 Sobic010G084000 Sobic010G084000 Sobic001G120300--Sobic010G084000 Sobic001G123000 Sobic001G123000 Sobic001G120300--Sobic001G123000 Sobic010G205800 Sobic010G205800 Sobic001G120300--Sobic010G205800 Sobic001G000200 Sobic001G000200 Sobic001G120300--Sobic001G000200 Sobic004G183600 Sobic004G183600 Sobic001G120300--Sobic004G183600 Sobic002G092300 Sobic002G092300 Sobic001G120300--Sobic002G092300 Sobic001G427100--Sobic003G305200 Sobic009G121100 Sobic009G121100 Sobic001G427100--Sobic009G121100 Sobic001G474700 Sobic001G474700 Sobic001G427100--Sobic001G474700 Sobic004G295800 Sobic004G295800 Sobic001G427100--Sobic004G295800 Sobic001G156100 Sobic001G156100 Sobic001G427100--Sobic001G156100 Sobic009G126900 Sobic009G126900 Sobic001G427100--Sobic009G126900 Sobic003G005600 Sobic003G005600 Sobic001G427100--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic001G427100--Sobic003G329400 Sobic001G373200 Sobic001G373200 Sobic001G427100--Sobic001G373200 Sobic009G235900 Sobic009G235900 Sobic003G145900--Sobic009G235900 Sobic008G160700 Sobic008G160700 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic007G024700 Sobic007G024700 Sobic003G305200--Sobic007G024700 Sobic003G305200--Sobic010G130200 Sobic003G305200--Sobic001G427100 Sobic003G305200--Sobic006G083600 Sobic002G132000 Sobic002G132000 Sobic003G305200--Sobic002G132000 Sobic003G305200--Sobic004G295800 Sobic009G094300 Sobic009G094300 Sobic003G305200--Sobic009G094300 Sobic002G270500 Sobic002G270500 Sobic003G305200--Sobic002G270500 Sobic003G305200--Sobic003G329400 Sobic009G148300--Sobic007G041500 Sobic007G119200 Sobic007G119200 Sobic009G148300--Sobic007G119200 Sobic004G113400 Sobic004G113400 Sobic009G148300--Sobic004G113400 Sobic001G058700 Sobic001G058700 Sobic009G148300--Sobic001G058700 Sobic007G172400 Sobic007G172400 Sobic009G148300--Sobic007G172400 Sobic002G071500 Sobic002G071500 Sobic009G148300--Sobic002G071500 Sobic010G069100 Sobic010G069100 Sobic009G148300--Sobic010G069100 Sobic006G037700 Sobic006G037700 Sobic009G148300--Sobic006G037700 Sobic003G408600 Sobic003G408600 Sobic009G148300--Sobic003G408600 Sobic010G078100 Sobic010G078100 Sobic002G303000--Sobic010G078100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic003G407300 Sobic003G407300 Sobic002G303000--Sobic003G407300 Sobic009G040700 Sobic009G040700 Sobic002G303000--Sobic009G040700 Sobic002G303000--Sobic005G007800 Sobic004G196700 Sobic004G196700 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic008G024600 Sobic008G024600 Sobic002G303000--Sobic008G024600
Octagon: transcription factors


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