Gene annotation
Transcriptome id Sobic.001G120300.1
Synonym Sb01g010630
Functional annotation phytanoyl-CoA dioxygenase, putative, expressed
UniProt C5WNQ9
Pfam PF05721
Panther DB PTHR20883 PTHR20883:SF14
NCBI CDD KOG3290; Peroxisomal phytanoyl-CoA hydroxylase
KEGG Orthology K00477; phytanoyl-CoA hydroxylase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G01490 : phytanoyl-CoA dioxygenase (PhyH) family protein
RAP-DB (Rice) LOC_Os03g50040.1 : phytanoyl-CoA dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a007170 , Zm00025a007798 , Zm00025a036395 , Zm00025a017019
Brachypodium KQK13583 , KQK13582 , PNT74248
Barley HORVU4Hr1G007050.8 , HORVU4Hr1G007050.4 , HORVU4Hr1G007050.5 , HORVU4Hr1G007050.6 , HORVU4Hr1G007050.7 , HORVU4Hr1G007050.1 , HORVU4Hr1G007050.2 , HORVU4Hr1G007050.3
Wheat TraesCS4D02G040900 , TraesCS4B02G043400 , TraesCS4B02G043400 , TraesCS4A02G270700 , TraesCS4A02G270700
Populus -


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cDNA sequences
Sobic.001G120300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
2 Sobic.001G394600 expressed protein -
3 Sobic.004G127700 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
4 Sobic.010G084000 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed -
5 Sobic.001G123000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
6 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
7 Sobic.001G000200 TBC domain containing protein, expressed -
8 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
9 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
10 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
11 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
12 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
13 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
14 Sobic.002G339500 diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
15 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
16 Sobic.008G147700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K14169: CTU2, cytoplasmic tRNA 2-thiolation protein 2
17 Sobic.007G007000 DUF250 domain containing protein, putative, expressed K15356: VRG4, GDP-mannose transporter
18 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
19 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
20 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase


Gene co-expression network
sample Sobic001G120300 Sobic001G120300 Sobic003G354400 Sobic003G354400 Sobic001G120300--Sobic003G354400 Sobic001G394600 Sobic001G394600 Sobic001G120300--Sobic001G394600 Sobic004G127700 Sobic004G127700 Sobic001G120300--Sobic004G127700 Sobic010G084000 Sobic010G084000 Sobic001G120300--Sobic010G084000 Sobic001G123000 Sobic001G123000 Sobic001G120300--Sobic001G123000 Sobic010G205800 Sobic010G205800 Sobic001G120300--Sobic010G205800 Sobic001G000200 Sobic001G000200 Sobic001G120300--Sobic001G000200 Sobic004G183600 Sobic004G183600 Sobic001G120300--Sobic004G183600 Sobic002G092300 Sobic002G092300 Sobic001G120300--Sobic002G092300 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900 Sobic002G361300 Sobic002G361300 Sobic001G394600--Sobic002G361300 Sobic001G394600--Sobic001G120300 Sobic006G114500 Sobic006G114500 Sobic001G394600--Sobic006G114500 Sobic004G339100 Sobic004G339100 Sobic001G394600--Sobic004G339100 Sobic001G394600--Sobic010G205800 Sobic001G201400 Sobic001G201400 Sobic001G394600--Sobic001G201400 Sobic007G024700 Sobic007G024700 Sobic001G394600--Sobic007G024700 Sobic001G394600--Sobic001G000200 Sobic004G158700 Sobic004G158700 Sobic001G394600--Sobic004G158700 Sobic003G233600 Sobic003G233600 Sobic004G127700--Sobic003G233600 Sobic009G094300 Sobic009G094300 Sobic004G127700--Sobic009G094300 Sobic002G308500 Sobic002G308500 Sobic004G127700--Sobic002G308500 Sobic004G127700--Sobic004G339100 Sobic004G127700--Sobic001G120300 Sobic004G127700--Sobic001G111150 Sobic009G139900 Sobic009G139900 Sobic004G127700--Sobic009G139900 Sobic004G127700--Sobic009G057300 Sobic004G136300 Sobic004G136300 Sobic004G127700--Sobic004G136300 Sobic010G084000--Sobic001G120300 Sobic010G256800 Sobic010G256800 Sobic010G084000--Sobic010G256800 Sobic003G370200 Sobic003G370200 Sobic010G084000--Sobic003G370200 Sobic010G021000 Sobic010G021000 Sobic010G084000--Sobic010G021000 Sobic010G019800 Sobic010G019800 Sobic010G084000--Sobic010G019800 Sobic002G301500 Sobic002G301500 Sobic010G084000--Sobic002G301500 Sobic008G133400 Sobic008G133400 Sobic010G084000--Sobic008G133400 Sobic010G106900 Sobic010G106900 Sobic010G084000--Sobic010G106900 Sobic001G057200 Sobic001G057200 Sobic010G084000--Sobic001G057200 Sobic007G007000 Sobic007G007000 Sobic001G123000--Sobic007G007000 Sobic009G259400 Sobic009G259400 Sobic001G123000--Sobic009G259400 Sobic003G344900 Sobic003G344900 Sobic001G123000--Sobic003G344900 Sobic001G123000--Sobic001G120300 Sobic001G098200 Sobic001G098200 Sobic001G123000--Sobic001G098200 Sobic010G090900 Sobic010G090900 Sobic001G123000--Sobic010G090900 Sobic001G123000--Sobic006G114500 Sobic005G091600 Sobic005G091600 Sobic001G123000--Sobic005G091600 Sobic007G177000 Sobic007G177000 Sobic001G123000--Sobic007G177000 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic009G199200 Sobic009G199200 Sobic001G000200--Sobic009G199200 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic008G004600 Sobic008G004600 Sobic001G000200--Sobic008G004600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G000200--Sobic001G079200 Sobic001G071400 Sobic001G071400 Sobic001G000200--Sobic001G071400 Sobic001G047400 Sobic001G047400 Sobic004G183600--Sobic001G047400 Sobic001G270400 Sobic001G270400 Sobic004G183600--Sobic001G270400 Sobic001G137100 Sobic001G137100 Sobic004G183600--Sobic001G137100 Sobic002G116900 Sobic002G116900 Sobic004G183600--Sobic002G116900 Sobic002G230100 Sobic002G230100 Sobic004G183600--Sobic002G230100 Sobic004G183600--Sobic003G354400 Sobic004G183600--Sobic001G120300 Sobic004G183600--Sobic007G024700 Sobic004G183600--Sobic001G394600 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic004G250300 Sobic004G250300 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000
Octagon: transcription factors


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