Gene annotation
Transcriptome id Sobic.002G092300.1
Synonym emb1345, Sb02g007630
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5X234
Pfam PF00400
Panther DB PTHR19920 PTHR19920:SF0
NCBI CDD KOG0645; WD40 repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G26060 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os07g14830.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045516
Brachypodium KQK20230
Barley HORVU7Hr1G101230.4 , HORVU7Hr1G101230.5 , HORVU7Hr1G101230.8 , HORVU7Hr1G101230.2 , HORVU7Hr1G101230.3 , HORVU7Hr1G101230.1
Wheat TraesCS7A02G446400 , TraesCS7A02G446400 , TraesCS7B02G346200 , TraesCS7D02G435500 , TraesCS7D02G435500 , TraesCS7A02G446500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
2 Sobic.004G250300 eukaryotic aspartyl protease domain containing protein, expressed -
3 Sobic.004G021200 expressed protein -
4 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
5 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
6 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
7 Sobic.001G000200 TBC domain containing protein, expressed -
8 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
9 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
10 Sobic.002G283600 AGAP005770-PA, putative, expressed -
11 Sobic.002G090800 expressed protein -
12 Sobic.010G176500 expressed protein -
13 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
14 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
15 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
16 Sobic.002G187801 - K03134: transcription initiation factor TFIID subunit 10
17 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
18 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
19 Sobic.001G275900 calcium-transporting ATPase, plasma membrane-type, putative, expressed -
20 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic002G092300 Sobic002G092300 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic004G250300 Sobic004G250300 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic001G000200 Sobic001G000200 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic005G106500 Sobic005G106500 Sobic010G279700--Sobic005G106500 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic010G279700--Sobic004G021200 Sobic004G250300--Sobic002G092300 Sobic003G405700 Sobic003G405700 Sobic004G250300--Sobic003G405700 Sobic004G250300--Sobic003G250500 Sobic002G180000 Sobic002G180000 Sobic004G250300--Sobic002G180000 Sobic004G301900 Sobic004G301900 Sobic004G250300--Sobic004G301900 Sobic002G259400 Sobic002G259400 Sobic004G250300--Sobic002G259400 Sobic009G033900 Sobic009G033900 Sobic004G250300--Sobic009G033900 Sobic010G090900 Sobic010G090900 Sobic004G250300--Sobic010G090900 Sobic002G187801 Sobic002G187801 Sobic004G250300--Sobic002G187801 Sobic003G266001 Sobic003G266001 Sobic004G021200--Sobic003G266001 Sobic008G103200 Sobic008G103200 Sobic004G021200--Sobic008G103200 Sobic004G021200--Sobic010G279700 Sobic004G021200--Sobic001G281600 Sobic004G021200--Sobic008G083000 Sobic006G273200 Sobic006G273200 Sobic004G021200--Sobic006G273200 Sobic004G021200--Sobic005G106500 Sobic007G096000 Sobic007G096000 Sobic004G021200--Sobic007G096000 Sobic002G310200 Sobic002G310200 Sobic004G021200--Sobic002G310200 Sobic001G107500 Sobic001G107500 Sobic007G115200--Sobic001G107500 Sobic007G115200--Sobic001G016000 Sobic001G309400 Sobic001G309400 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic002G347000 Sobic002G347000 Sobic007G115200--Sobic002G347000 Sobic002G363600 Sobic002G363600 Sobic007G115200--Sobic002G363600 Sobic002G351900 Sobic002G351900 Sobic007G115200--Sobic002G351900 Sobic007G115200--Sobic001G281600 Sobic007G115200--Sobic002G092300 Sobic008G092300--Sobic010G279700 Sobic008G092300--Sobic001G094900 Sobic007G225100 Sobic007G225100 Sobic008G092300--Sobic007G225100 Sobic001G261456 Sobic001G261456 Sobic008G092300--Sobic001G261456 Sobic010G269100 Sobic010G269100 Sobic008G092300--Sobic010G269100 Sobic003G126600 Sobic003G126600 Sobic008G092300--Sobic003G126600 Sobic008G112800 Sobic008G112800 Sobic008G092300--Sobic008G112800 Sobic001G102700 Sobic001G102700 Sobic008G092300--Sobic001G102700 Sobic004G039600 Sobic004G039600 Sobic008G092300--Sobic004G039600 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic009G199200 Sobic009G199200 Sobic001G000200--Sobic009G199200 Sobic010G205800 Sobic010G205800 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic008G004600 Sobic008G004600 Sobic001G000200--Sobic008G004600 Sobic003G233600 Sobic003G233600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G079200 Sobic001G079200 Sobic001G000200--Sobic001G079200 Sobic001G071400 Sobic001G071400 Sobic001G000200--Sobic001G071400 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic002G034600 Sobic002G034600 Sobic001G016000--Sobic002G034600 Sobic010G236400 Sobic010G236400 Sobic001G016000--Sobic010G236400 Sobic003G397800 Sobic003G397800 Sobic001G016000--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic001G016000--Sobic001G409600 Sobic004G205600 Sobic004G205600 Sobic001G016000--Sobic004G205600 Sobic004G274200 Sobic004G274200 Sobic001G016000--Sobic004G274200 Sobic002G283600 Sobic002G283600 Sobic001G016000--Sobic002G283600 Sobic007G119200 Sobic007G119200 Sobic001G016000--Sobic007G119200 Sobic006G173100 Sobic006G173100 Sobic001G016000--Sobic006G173100
Octagon: transcription factors


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