Gene annotation
Transcriptome id Sobic.004G095300.1
Synonym Sb04g007860
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5XYF2
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF318
NCBI CDD KOG0131; Splicing factor 3b, subunit 4
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G17640 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g12850.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a020178 , Zm00025a034555 , Zm00025a050991
Brachypodium KQJ94080
Barley HORVU7Hr1G087550.10 , HORVU7Hr1G087550.11 , HORVU6Hr1G040220.4 , HORVU6Hr1G040220.5 , HORVU6Hr1G040220.6 , HORVU6Hr1G040220.7 , HORVU6Hr1G040220.1 , HORVU6Hr1G040220.2 , HORVU6Hr1G040220.3 , HORVU6Hr1G040220.8 , HORVU6Hr1G040220.9 , HORVU7Hr1G087550.2 , HORVU7Hr1G087550.3 , HORVU7Hr1G087550.1 , HORVU7Hr1G087550.6 , HORVU7Hr1G087550.8 , HORVU6Hr1G040220.10 , HORVU6Hr1G040220.11 , HORVU7Hr1G087550.7 , HORVU7Hr1G087550.4 , HORVU7Hr1G087550.5 , HORVU7Hr1G087550.9
Wheat TraesCS6B02G217500 , TraesCS6B02G217500 , TraesCS6D02G173900 , TraesCS6A02G187000 , TraesCS7D02G362200 , TraesCS7A02G360900
Populus -


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cDNA sequences
Sobic.004G095300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
3 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
6 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
7 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
8 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
9 Sobic.002G180000 protein kinase domain containing protein, expressed -
10 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.007G084100 expressed protein -
12 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
13 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
14 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
15 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
16 Sobic.010G176500 expressed protein -
17 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
18 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
19 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
20 Sobic.007G039400 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase


Gene co-expression network
sample Sobic004G095300 Sobic004G095300 Sobic010G171100 Sobic010G171100 Sobic004G095300--Sobic010G171100 Sobic003G123000 Sobic003G123000 Sobic004G095300--Sobic003G123000 Sobic001G003500 Sobic001G003500 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic001G473600 Sobic001G473600 Sobic004G095300--Sobic001G473600 Sobic001G088100 Sobic001G088100 Sobic004G095300--Sobic001G088100 Sobic005G220000 Sobic005G220000 Sobic004G095300--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic010G171100--Sobic003G123000 Sobic010G228700 Sobic010G228700 Sobic010G171100--Sobic010G228700 Sobic010G171100--Sobic005G220000 Sobic010G171100--Sobic010G085200 Sobic010G171100--Sobic001G088100 Sobic002G058700 Sobic002G058700 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic003G123000--Sobic003G122500 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic003G123000--Sobic001G473600 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic010G279700 Sobic010G279700 Sobic002G092300--Sobic010G279700 Sobic004G250300 Sobic004G250300 Sobic002G092300--Sobic004G250300 Sobic004G021200 Sobic004G021200 Sobic002G092300--Sobic004G021200 Sobic007G115200 Sobic007G115200 Sobic002G092300--Sobic007G115200 Sobic008G092300 Sobic008G092300 Sobic002G092300--Sobic008G092300 Sobic001G281600 Sobic001G281600 Sobic002G092300--Sobic001G281600 Sobic001G000200 Sobic001G000200 Sobic002G092300--Sobic001G000200 Sobic003G250500 Sobic003G250500 Sobic002G092300--Sobic003G250500 Sobic001G016000 Sobic001G016000 Sobic002G092300--Sobic001G016000 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic001G473600--Sobic007G084100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic002G145800 Sobic002G145800 Sobic005G220000--Sobic002G145800 Sobic007G183900 Sobic007G183900 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic005G220000--Sobic003G062300 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic007G111100 Sobic007G111100 Sobic002G180000--Sobic007G111100 Sobic001G143500 Sobic001G143500 Sobic002G180000--Sobic001G143500 Sobic008G139700 Sobic008G139700 Sobic002G180000--Sobic008G139700 Sobic006G065800 Sobic006G065800 Sobic002G180000--Sobic006G065800 Sobic006G267300 Sobic006G267300 Sobic002G180000--Sobic006G267300 Sobic001G131800 Sobic001G131800 Sobic002G180000--Sobic001G131800 Sobic002G272600 Sobic002G272600 Sobic002G180000--Sobic002G272600 Sobic001G080000 Sobic001G080000 Sobic002G180000--Sobic001G080000 Sobic003G405700 Sobic003G405700 Sobic002G180000--Sobic003G405700
Octagon: transcription factors


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