Gene annotation
Transcriptome id Sobic.001G222900.1
Synonym Sb01g019610
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QKD1
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF308
NCBI CDD KOG4205; RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1
KEGG Orthology K14411; RNA-binding protein Musashi
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G14300 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os10g33230.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017652 , Zm00025a006657
Brachypodium KQJ97035
Barley HORVU1Hr1G039790.13 , HORVU1Hr1G039790.12 , HORVU1Hr1G039790.11 , HORVU1Hr1G039790.10 , HORVU1Hr1G039790.17 , HORVU1Hr1G039790.16 , HORVU1Hr1G039790.15 , HORVU1Hr1G039790.14 , HORVU1Hr1G039790.3 , HORVU1Hr1G039790.2 , HORVU1Hr1G039790.1 , HORVU1Hr1G039790.7 , HORVU1Hr1G039790.6 , HORVU1Hr1G039790.5 , HORVU1Hr1G039790.4 , HORVU1Hr1G039790.9 , HORVU1Hr1G039790.8
Wheat TraesCS1A02G150600 , TraesCS1B02G168200 , TraesCS1B02G168200 , TraesCS1D02G147600
Populus -


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cDNA sequences
Sobic.001G222900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G108900 expressed protein -
2 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
3 Sobic.005G007700 expressed protein -
4 Sobic.004G246700 zinc finger family protein, putative, expressed -
5 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
6 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
7 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
8 Sobic.002G224700 NFKB, putative, expressed -
9 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
10 Sobic.006G263000 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
11 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
12 Sobic.008G165700 expressed protein -
13 Sobic.001G191100 OsFBX157 - F-box domain containing protein, expressed -
14 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
16 Sobic.010G143200 - -
17 Sobic.001G294100 ICE-like protease p20 domain containing protein, expressed -
18 Sobic.001G151900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF593 domain containing protein, expressed -
19 Sobic.005G046900 expressed protein K08331: autophagy-related protein 13
20 Sobic.007G041300 expressed protein -


Gene co-expression network
sample Sobic001G222900 Sobic001G222900 Sobic001G108900 Sobic001G108900 Sobic001G222900--Sobic001G108900 Sobic003G123000 Sobic003G123000 Sobic001G222900--Sobic003G123000 Sobic005G007700 Sobic005G007700 Sobic001G222900--Sobic005G007700 Sobic004G246700 Sobic004G246700 Sobic001G222900--Sobic004G246700 Sobic005G079800 Sobic005G079800 Sobic001G222900--Sobic005G079800 Sobic008G165100 Sobic008G165100 Sobic001G222900--Sobic008G165100 Sobic002G309800 Sobic002G309800 Sobic001G222900--Sobic002G309800 Sobic002G224700 Sobic002G224700 Sobic001G222900--Sobic002G224700 Sobic004G095300 Sobic004G095300 Sobic001G222900--Sobic004G095300 Sobic001G108900--Sobic001G222900 Sobic007G117100 Sobic007G117100 Sobic001G108900--Sobic007G117100 Sobic003G140900 Sobic003G140900 Sobic001G108900--Sobic003G140900 Sobic001G294700 Sobic001G294700 Sobic001G108900--Sobic001G294700 Sobic002G106900 Sobic002G106900 Sobic001G108900--Sobic002G106900 Sobic004G017950 Sobic004G017950 Sobic001G108900--Sobic004G017950 Sobic001G309100 Sobic001G309100 Sobic001G108900--Sobic001G309100 Sobic001G108900--Sobic004G246700 Sobic001G426900 Sobic001G426900 Sobic001G108900--Sobic001G426900 Sobic003G122500 Sobic003G122500 Sobic003G123000--Sobic003G122500 Sobic003G123000--Sobic004G095300 Sobic003G123000--Sobic001G222900 Sobic010G171100 Sobic010G171100 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic001G473600 Sobic001G473600 Sobic003G123000--Sobic001G473600 Sobic005G007700--Sobic001G222900 Sobic010G137400 Sobic010G137400 Sobic005G007700--Sobic010G137400 Sobic007G112900 Sobic007G112900 Sobic005G007700--Sobic007G112900 Sobic010G143200 Sobic010G143200 Sobic005G007700--Sobic010G143200 Sobic005G007700--Sobic008G165100 Sobic010G269600 Sobic010G269600 Sobic005G007700--Sobic010G269600 Sobic003G159450 Sobic003G159450 Sobic005G007700--Sobic003G159450 Sobic005G229000 Sobic005G229000 Sobic005G007700--Sobic005G229000 Sobic010G000700 Sobic010G000700 Sobic005G007700--Sobic010G000700 Sobic004G349900 Sobic004G349900 Sobic004G246700--Sobic004G349900 Sobic002G365100 Sobic002G365100 Sobic004G246700--Sobic002G365100 Sobic002G259800 Sobic002G259800 Sobic004G246700--Sobic002G259800 Sobic008G127400 Sobic008G127400 Sobic004G246700--Sobic008G127400 Sobic003G241200 Sobic003G241200 Sobic004G246700--Sobic003G241200 Sobic010G202600 Sobic010G202600 Sobic004G246700--Sobic010G202600 Sobic004G096500 Sobic004G096500 Sobic004G246700--Sobic004G096500 Sobic002G320500 Sobic002G320500 Sobic004G246700--Sobic002G320500 Sobic002G034600 Sobic002G034600 Sobic004G246700--Sobic002G034600 Sobic003G438900 Sobic003G438900 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic007G191700 Sobic007G191700 Sobic005G079800--Sobic007G191700 Sobic002G153700 Sobic002G153700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic003G427100 Sobic003G427100 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic005G079800--Sobic004G096500 Sobic002G067800 Sobic002G067800 Sobic008G165100--Sobic002G067800 Sobic008G165100--Sobic010G194700 Sobic008G073000 Sobic008G073000 Sobic008G165100--Sobic008G073000 Sobic005G030300 Sobic005G030300 Sobic008G165100--Sobic005G030300 Sobic002G095700 Sobic002G095700 Sobic008G165100--Sobic002G095700 Sobic006G123900 Sobic006G123900 Sobic008G165100--Sobic006G123900 Sobic002G151600 Sobic002G151600 Sobic008G165100--Sobic002G151600 Sobic003G433500 Sobic003G433500 Sobic008G165100--Sobic003G433500 Sobic002G045400 Sobic002G045400 Sobic008G165100--Sobic002G045400 Sobic009G065100 Sobic009G065100 Sobic002G309800--Sobic009G065100 Sobic002G309800--Sobic001G253200 Sobic010G056200 Sobic010G056200 Sobic002G309800--Sobic010G056200 Sobic002G309800--Sobic007G054400 Sobic009G215800 Sobic009G215800 Sobic002G309800--Sobic009G215800 Sobic002G309800--Sobic005G079800 Sobic009G070100 Sobic009G070100 Sobic002G309800--Sobic009G070100 Sobic007G078600 Sobic007G078600 Sobic002G309800--Sobic007G078600 Sobic004G087600 Sobic004G087600 Sobic002G309800--Sobic004G087600 Sobic006G248500 Sobic006G248500 Sobic002G224700--Sobic006G248500 Sobic002G224700--Sobic008G127400 Sobic007G027700 Sobic007G027700 Sobic002G224700--Sobic007G027700 Sobic001G029400 Sobic001G029400 Sobic002G224700--Sobic001G029400 Sobic002G224700--Sobic004G246700 Sobic007G111100 Sobic007G111100 Sobic002G224700--Sobic007G111100 Sobic002G058300 Sobic002G058300 Sobic002G224700--Sobic002G058300 Sobic001G143500 Sobic001G143500 Sobic002G224700--Sobic001G143500 Sobic006G065800 Sobic006G065800 Sobic002G224700--Sobic006G065800 Sobic004G095300--Sobic010G171100 Sobic004G095300--Sobic003G123000 Sobic001G003500 Sobic001G003500 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic004G095300--Sobic001G473600 Sobic001G088100 Sobic001G088100 Sobic004G095300--Sobic001G088100 Sobic005G220000 Sobic005G220000 Sobic004G095300--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000
Octagon: transcription factors


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