Gene annotation
Transcriptome id Sobic.006G263000.1,Sobic.006G263000.2
Synonym Sb06g032580
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt C5YA61
Pfam PF11955
Panther DB PTHR31476 PTHR31476:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G63090 : Ubiquitin carboxyl-terminal hydrolase family protein
RAP-DB (Rice) LOC_Os01g18880.1,LOC_Os01g18880.2 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a009349
Brachypodium KQK04029 , KQK04028 , KQK04027 , PNT70391 , PNT70390 , PNT70392
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G263000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
2 Sobic.002G125900 ORM1, putative, expressed -
3 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -
4 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
5 Sobic.005G110475 - -
6 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -
7 Sobic.001G222250 - -
8 Sobic.002G234700 expressed protein -
9 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.008G078300 la domain containing protein, expressed K15191: La-related protein 7
11 Sobic.003G018900 bromodomain containing protein, expressed K11684: bromodomain-containing factor 1
12 Sobic.008G165700 expressed protein -
13 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
14 Sobic.006G145200 expressed protein -
15 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G147200 - -
18 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
19 Sobic.005G084400 la domain containing protein, expressed K15191: La-related protein 7
20 Sobic.009G094800 sugar porter, putative, expressed -


Gene co-expression network
sample Sobic006G263000 Sobic006G263000 Sobic002G309800 Sobic002G309800 Sobic006G263000--Sobic002G309800 Sobic002G125900 Sobic002G125900 Sobic006G263000--Sobic002G125900 Sobic001G031300 Sobic001G031300 Sobic006G263000--Sobic001G031300 Sobic001G222900 Sobic001G222900 Sobic006G263000--Sobic001G222900 Sobic005G110475 Sobic005G110475 Sobic006G263000--Sobic005G110475 Sobic001G298600 Sobic001G298600 Sobic006G263000--Sobic001G298600 Sobic001G222250 Sobic001G222250 Sobic006G263000--Sobic001G222250 Sobic002G234700 Sobic002G234700 Sobic006G263000--Sobic002G234700 Sobic002G040800 Sobic002G040800 Sobic006G263000--Sobic002G040800 Sobic009G065100 Sobic009G065100 Sobic002G309800--Sobic009G065100 Sobic001G253200 Sobic001G253200 Sobic002G309800--Sobic001G253200 Sobic010G056200 Sobic010G056200 Sobic002G309800--Sobic010G056200 Sobic007G054400 Sobic007G054400 Sobic002G309800--Sobic007G054400 Sobic009G215800 Sobic009G215800 Sobic002G309800--Sobic009G215800 Sobic005G079800 Sobic005G079800 Sobic002G309800--Sobic005G079800 Sobic009G070100 Sobic009G070100 Sobic002G309800--Sobic009G070100 Sobic007G078600 Sobic007G078600 Sobic002G309800--Sobic007G078600 Sobic004G087600 Sobic004G087600 Sobic002G309800--Sobic004G087600 Sobic002G125900--Sobic006G263000 Sobic007G120401 Sobic007G120401 Sobic002G125900--Sobic007G120401 Sobic001G351400 Sobic001G351400 Sobic002G125900--Sobic001G351400 Sobic002G404200 Sobic002G404200 Sobic002G125900--Sobic002G404200 Sobic002G125900--Sobic002G040800 Sobic003G222300 Sobic003G222300 Sobic002G125900--Sobic003G222300 Sobic008G146900 Sobic008G146900 Sobic002G125900--Sobic008G146900 Sobic004G210900 Sobic004G210900 Sobic002G125900--Sobic004G210900 Sobic003G314500 Sobic003G314500 Sobic002G125900--Sobic003G314500 Sobic010G258300 Sobic010G258300 Sobic001G031300--Sobic010G258300 Sobic007G076700 Sobic007G076700 Sobic001G031300--Sobic007G076700 Sobic007G205600 Sobic007G205600 Sobic001G031300--Sobic007G205600 Sobic004G035000 Sobic004G035000 Sobic001G031300--Sobic004G035000 Sobic009G154600 Sobic009G154600 Sobic001G031300--Sobic009G154600 Sobic001G031300--Sobic003G222300 Sobic001G377000 Sobic001G377000 Sobic001G031300--Sobic001G377000 Sobic001G191200 Sobic001G191200 Sobic001G031300--Sobic001G191200 Sobic007G110200 Sobic007G110200 Sobic001G031300--Sobic007G110200 Sobic001G108900 Sobic001G108900 Sobic001G222900--Sobic001G108900 Sobic003G123000 Sobic003G123000 Sobic001G222900--Sobic003G123000 Sobic005G007700 Sobic005G007700 Sobic001G222900--Sobic005G007700 Sobic004G246700 Sobic004G246700 Sobic001G222900--Sobic004G246700 Sobic001G222900--Sobic005G079800 Sobic008G165100 Sobic008G165100 Sobic001G222900--Sobic008G165100 Sobic001G222900--Sobic002G309800 Sobic002G224700 Sobic002G224700 Sobic001G222900--Sobic002G224700 Sobic004G095300 Sobic004G095300 Sobic001G222900--Sobic004G095300 Sobic002G336800 Sobic002G336800 Sobic005G110475--Sobic002G336800 Sobic008G125600 Sobic008G125600 Sobic005G110475--Sobic008G125600 Sobic003G144950 Sobic003G144950 Sobic005G110475--Sobic003G144950 Sobic009G103600 Sobic009G103600 Sobic005G110475--Sobic009G103600 Sobic009G085400 Sobic009G085400 Sobic005G110475--Sobic009G085400 Sobic008G011100 Sobic008G011100 Sobic005G110475--Sobic008G011100 Sobic005G110475--Sobic006G263000 Sobic002G144966 Sobic002G144966 Sobic005G110475--Sobic002G144966 Sobic001G081200 Sobic001G081200 Sobic005G110475--Sobic001G081200 Sobic007G132400 Sobic007G132400 Sobic001G298600--Sobic007G132400 Sobic006G228500 Sobic006G228500 Sobic001G298600--Sobic006G228500 Sobic004G121100 Sobic004G121100 Sobic001G298600--Sobic004G121100 Sobic001G107500 Sobic001G107500 Sobic001G298600--Sobic001G107500 Sobic002G310200 Sobic002G310200 Sobic001G298600--Sobic002G310200 Sobic006G273200 Sobic006G273200 Sobic001G298600--Sobic006G273200 Sobic001G298600--Sobic009G215800 Sobic003G176600 Sobic003G176600 Sobic001G298600--Sobic003G176600 Sobic001G281600 Sobic001G281600 Sobic001G298600--Sobic001G281600 Sobic010G143800 Sobic010G143800 Sobic001G222250--Sobic010G143800 Sobic005G027400 Sobic005G027400 Sobic001G222250--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic001G222250--Sobic010G079900 Sobic004G135300 Sobic004G135300 Sobic001G222250--Sobic004G135300 Sobic001G191600 Sobic001G191600 Sobic001G222250--Sobic001G191600 Sobic003G109700 Sobic003G109700 Sobic001G222250--Sobic003G109700 Sobic001G222250--Sobic001G081200 Sobic001G222250--Sobic001G298600 Sobic001G362200 Sobic001G362200 Sobic001G222250--Sobic001G362200 Sobic008G017100 Sobic008G017100 Sobic002G234700--Sobic008G017100 Sobic001G540800 Sobic001G540800 Sobic002G234700--Sobic001G540800 Sobic002G431400 Sobic002G431400 Sobic002G234700--Sobic002G431400 Sobic005G012700 Sobic005G012700 Sobic002G234700--Sobic005G012700 Sobic002G309200 Sobic002G309200 Sobic002G234700--Sobic002G309200 Sobic006G269800 Sobic006G269800 Sobic002G234700--Sobic006G269800 Sobic002G373950 Sobic002G373950 Sobic002G234700--Sobic002G373950 Sobic004G019500 Sobic004G019500 Sobic002G234700--Sobic004G019500 Sobic004G351800 Sobic004G351800 Sobic002G234700--Sobic004G351800 Sobic010G228700 Sobic010G228700 Sobic002G040800--Sobic010G228700 Sobic009G094800 Sobic009G094800 Sobic002G040800--Sobic009G094800 Sobic001G544500 Sobic001G544500 Sobic002G040800--Sobic001G544500 Sobic002G174900 Sobic002G174900 Sobic002G040800--Sobic002G174900 Sobic008G001400 Sobic008G001400 Sobic002G040800--Sobic008G001400 Sobic002G040800--Sobic004G135300 Sobic006G042200 Sobic006G042200 Sobic002G040800--Sobic006G042200 Sobic003G368800 Sobic003G368800 Sobic002G040800--Sobic003G368800 Sobic002G040800--Sobic006G263000
Octagon: transcription factors


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