Gene annotation
Transcriptome id Sobic.008G165100.1
Synonym Sb08g021110
Functional annotation G-patch domain containing protein, putative, expressed
UniProt C5YRV0
Pfam PF01585 PF12457 PF07842
Panther DB PTHR23329 PTHR23329:SF1
NCBI CDD -
KEGG Orthology K13103; tuftelin-interacting protein 11
Gene Ontology GO:0003676; nucleic acid binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G17070 : GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain
RAP-DB (Rice) LOC_Os12g42140.1 : G-patch domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a025346
Brachypodium KQJ85855
Barley HORVU5Hr1G011630.2 , HORVU5Hr1G011630.3 , HORVU5Hr1G011630.1 , HORVU5Hr1G011630.6 , HORVU5Hr1G011630.7 , HORVU5Hr1G011630.4 , HORVU5Hr1G011630.5
Wheat TraesCS2A02G161800
Populus PNT07269 , PNT07270 , PNT07271


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cDNA sequences
Sobic.008G165100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G067800 - -
2 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
3 Sobic.008G073000 expressed protein -
4 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.002G095700 C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
6 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
7 Sobic.002G151600 R-interacting factor 1, putative, expressed -
8 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
9 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.005G059100 bromodomain domain containing protein, expressed -
11 Sobic.002G018600 OsFBX234 - F-box domain containing protein, expressed -
12 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
13 Sobic.002G362300 prefoldin, putative, expressed -
14 Sobic.002G001600 MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
16 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
17 Sobic.002G313300 bromodomain domain containing protein, expressed -
18 Sobic.001G228700 - -
19 Sobic.001G206100 expressed protein -
20 Sobic.002G329300 basic helix-loop-helix DND-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic008G165100 Sobic008G165100 Sobic002G067800 Sobic002G067800 Sobic008G165100--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic008G165100--Sobic010G194700 Sobic008G073000 Sobic008G073000 Sobic008G165100--Sobic008G073000 Sobic005G030300 Sobic005G030300 Sobic008G165100--Sobic005G030300 Sobic002G095700 Sobic002G095700 Sobic008G165100--Sobic002G095700 Sobic006G123900 Sobic006G123900 Sobic008G165100--Sobic006G123900 Sobic002G151600 Sobic002G151600 Sobic008G165100--Sobic002G151600 Sobic003G433500 Sobic003G433500 Sobic008G165100--Sobic003G433500 Sobic002G045400 Sobic002G045400 Sobic008G165100--Sobic002G045400 Sobic002G067800--Sobic010G194700 Sobic002G067800--Sobic008G165100 Sobic005G059100 Sobic005G059100 Sobic002G067800--Sobic005G059100 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G159200 Sobic002G159200 Sobic002G067800--Sobic002G159200 Sobic003G355000 Sobic003G355000 Sobic002G067800--Sobic003G355000 Sobic007G043500 Sobic007G043500 Sobic002G067800--Sobic007G043500 Sobic002G067800--Sobic006G123900 Sobic010G194700--Sobic002G067800 Sobic001G206100 Sobic001G206100 Sobic010G194700--Sobic001G206100 Sobic010G194700--Sobic008G165100 Sobic010G194700--Sobic002G151600 Sobic004G213000 Sobic004G213000 Sobic010G194700--Sobic004G213000 Sobic010G194700--Sobic005G059100 Sobic006G013500 Sobic006G013500 Sobic010G194700--Sobic006G013500 Sobic005G079800 Sobic005G079800 Sobic010G194700--Sobic005G079800 Sobic003G197800 Sobic003G197800 Sobic010G194700--Sobic003G197800 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic005G030300--Sobic008G073000 Sobic005G030300--Sobic008G165100 Sobic005G030300--Sobic002G095700 Sobic005G030300--Sobic003G433500 Sobic005G030300--Sobic002G045400 Sobic005G030300--Sobic006G278200 Sobic005G030300--Sobic008G101800 Sobic002G362300 Sobic002G362300 Sobic005G030300--Sobic002G362300 Sobic009G022100 Sobic009G022100 Sobic005G030300--Sobic009G022100 Sobic002G095700--Sobic006G278200 Sobic002G095700--Sobic008G073000 Sobic002G095700--Sobic005G030300 Sobic002G095700--Sobic008G165100 Sobic002G095700--Sobic002G067800 Sobic002G095700--Sobic003G433500 Sobic002G089900 Sobic002G089900 Sobic002G095700--Sobic002G089900 Sobic002G095700--Sobic009G022100 Sobic004G078100 Sobic004G078100 Sobic002G095700--Sobic004G078100 Sobic008G106000 Sobic008G106000 Sobic006G123900--Sobic008G106000 Sobic002G001600 Sobic002G001600 Sobic006G123900--Sobic002G001600 Sobic006G123900--Sobic005G059100 Sobic002G313300 Sobic002G313300 Sobic006G123900--Sobic002G313300 Sobic006G123900--Sobic006G013500 Sobic008G129700 Sobic008G129700 Sobic006G123900--Sobic008G129700 Sobic006G080300 Sobic006G080300 Sobic006G123900--Sobic006G080300 Sobic007G185900 Sobic007G185900 Sobic006G123900--Sobic007G185900 Sobic006G123900--Sobic002G151600 Sobic002G157000 Sobic002G157000 Sobic002G151600--Sobic002G157000 Sobic002G151600--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic002G151600--Sobic002G320500 Sobic002G151600--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic002G151600--Sobic009G000500 Sobic001G094000 Sobic001G094000 Sobic002G151600--Sobic001G094000 Sobic009G065100 Sobic009G065100 Sobic002G151600--Sobic009G065100 Sobic002G248400 Sobic002G248400 Sobic002G151600--Sobic002G248400 Sobic001G303675 Sobic001G303675 Sobic002G151600--Sobic001G303675 Sobic009G195200 Sobic009G195200 Sobic003G433500--Sobic009G195200 Sobic003G433500--Sobic003G355000 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic006G267300 Sobic006G267300 Sobic003G433500--Sobic006G267300 Sobic006G248500 Sobic006G248500 Sobic003G433500--Sobic006G248500 Sobic003G433500--Sobic002G362300 Sobic002G259800 Sobic002G259800 Sobic003G433500--Sobic002G259800 Sobic002G045400--Sobic008G073000 Sobic002G045400--Sobic003G355000 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic002G045400--Sobic005G030300
Octagon: transcription factors


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