Gene annotation
Transcriptome id Sobic.003G305200.1
Synonym Sb03g035370
Functional annotation glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt C5XKV3
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF19
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology K01126; E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT5G08030 : PLC-like phosphodiesterases superfamily protein
RAP-DB (Rice) LOC_Os01g55780.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a039960
Brachypodium PNT72903
Barley HORVU3Hr1G073870.6 , HORVU3Hr1G073870.7 , HORVU3Hr1G073870.4 , HORVU3Hr1G073870.5 , HORVU3Hr1G073870.3 , HORVU3Hr1G073870.1 , HORVU3Hr1G073870.8
Wheat TraesCS3A02G302700 , TraesCS3B02G333600 , TraesCS3D02G299100
Populus -


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cDNA sequences
Sobic.003G305200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
2 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
3 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
4 Sobic.006G083600 expressed protein K10134: etoposide-induced 2.4 mRNA
5 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
6 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
7 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
8 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
9 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
10 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
12 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
14 Sobic.008G191100 nodulin, putative, expressed -
15 Sobic.009G121100 expressed protein -
16 Sobic.004G264400 TBC domain containing protein, expressed -
17 Sobic.010G264200 UPF0183 protein, putative, expressed -
18 Sobic.006G052100 nodulin, putative, expressed -
19 Sobic.005G157000 expressed protein -
20 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)


Gene co-expression network
sample Sobic003G305200 Sobic003G305200 Sobic007G024700 Sobic007G024700 Sobic003G305200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic003G305200--Sobic010G130200 Sobic001G427100 Sobic001G427100 Sobic003G305200--Sobic001G427100 Sobic006G083600 Sobic006G083600 Sobic003G305200--Sobic006G083600 Sobic002G132000 Sobic002G132000 Sobic003G305200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic003G305200--Sobic004G295800 Sobic009G094300 Sobic009G094300 Sobic003G305200--Sobic009G094300 Sobic002G270500 Sobic002G270500 Sobic003G305200--Sobic002G270500 Sobic003G329400 Sobic003G329400 Sobic003G305200--Sobic003G329400 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic007G024700--Sobic003G305200 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic010G130200--Sobic006G083600 Sobic001G111150 Sobic001G111150 Sobic010G130200--Sobic001G111150 Sobic010G130200--Sobic003G305200 Sobic006G271200 Sobic006G271200 Sobic010G130200--Sobic006G271200 Sobic010G130200--Sobic002G270500 Sobic010G264200 Sobic010G264200 Sobic010G130200--Sobic010G264200 Sobic003G354400 Sobic003G354400 Sobic010G130200--Sobic003G354400 Sobic010G130200--Sobic007G024700 Sobic005G203800 Sobic005G203800 Sobic010G130200--Sobic005G203800 Sobic001G427100--Sobic003G305200 Sobic009G121100 Sobic009G121100 Sobic001G427100--Sobic009G121100 Sobic001G474700 Sobic001G474700 Sobic001G427100--Sobic001G474700 Sobic001G427100--Sobic004G295800 Sobic001G156100 Sobic001G156100 Sobic001G427100--Sobic001G156100 Sobic009G126900 Sobic009G126900 Sobic001G427100--Sobic009G126900 Sobic003G005600 Sobic003G005600 Sobic001G427100--Sobic003G005600 Sobic001G427100--Sobic003G329400 Sobic001G373200 Sobic001G373200 Sobic001G427100--Sobic001G373200 Sobic006G083600--Sobic010G130200 Sobic006G083600--Sobic003G305200 Sobic002G189400 Sobic002G189400 Sobic006G083600--Sobic002G189400 Sobic006G083600--Sobic010G264200 Sobic006G083600--Sobic007G024700 Sobic003G155900 Sobic003G155900 Sobic006G083600--Sobic003G155900 Sobic002G262900 Sobic002G262900 Sobic006G083600--Sobic002G262900 Sobic001G124200 Sobic001G124200 Sobic006G083600--Sobic001G124200 Sobic004G113400 Sobic004G113400 Sobic006G083600--Sobic004G113400 Sobic004G006200 Sobic004G006200 Sobic002G132000--Sobic004G006200 Sobic002G132000--Sobic004G264400 Sobic002G132000--Sobic007G024700 Sobic002G132000--Sobic004G295800 Sobic001G109800 Sobic001G109800 Sobic002G132000--Sobic001G109800 Sobic001G290000 Sobic001G290000 Sobic002G132000--Sobic001G290000 Sobic009G113000 Sobic009G113000 Sobic002G132000--Sobic009G113000 Sobic002G132000--Sobic003G305200 Sobic001G137100 Sobic001G137100 Sobic002G132000--Sobic001G137100 Sobic008G191100 Sobic008G191100 Sobic004G295800--Sobic008G191100 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic004G295800--Sobic009G121100 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic004G295800--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic004G295800--Sobic003G407300 Sobic004G295800--Sobic001G290000 Sobic009G094300--Sobic007G024700 Sobic009G094300--Sobic004G113400 Sobic009G094300--Sobic002G270500 Sobic004G329400 Sobic004G329400 Sobic009G094300--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic009G094300--Sobic005G157000 Sobic009G094300--Sobic004G052900 Sobic009G094300--Sobic001G270400 Sobic001G248300 Sobic001G248300 Sobic009G094300--Sobic001G248300 Sobic001G207400 Sobic001G207400 Sobic009G094300--Sobic001G207400 Sobic002G270500--Sobic007G024700 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic002G270500--Sobic005G157000 Sobic002G430000 Sobic002G430000 Sobic002G270500--Sobic002G430000 Sobic002G270500--Sobic009G126900 Sobic002G270500--Sobic009G094300 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic008G062200 Sobic008G062200 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G329400--Sobic003G354400
Octagon: transcription factors


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