Gene annotation
Transcriptome id Sobic.006G052100.1
Synonym Sb06g013890
Functional annotation nodulin, putative, expressed
UniProt C5YET1
Pfam PF06813
Panther DB PTHR21576 PTHR21576:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01930 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os04g31924.1 : nodulin, putative, expressed
MaizeGDB (Corn) Zm00025a011759 , Zm00025a011756 , Zm00025a011764 , Zm00025a055904
Brachypodium KQJ82281 , PNT60921 , PNT60920
Barley HORVU2Hr1G069980.1 , HORVU2Hr1G069980.2 , HORVU2Hr1G069980.3 , HORVU2Hr1G069980.4 , HORVU2Hr1G069980.5 , HORVU2Hr1G069980.7 , HORVU2Hr1G069980.8
Wheat TraesCS2A02G284100 , TraesCS2D02G283000 , TraesCS2B02G301000 , TraesCS2B02G301000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G042300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
3 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
4 Sobic.009G193700 transmembrane protein 56, putative, expressed -
5 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
6 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
7 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
8 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
9 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase
10 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
11 Sobic.002G245300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@citrate transporter, putative, expressed K14445: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
12 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
13 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
14 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
15 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
16 Sobic.008G191100 nodulin, putative, expressed -
17 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
18 Sobic.010G130200 BPI/LBP family protein At3g20270 precursor, putative, expressed K05399: lipopolysaccharide-binding protein
19 Sobic.004G169700 - -
20 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase


Gene co-expression network
sample Sobic006G052100 Sobic006G052100 Sobic004G042300 Sobic004G042300 Sobic006G052100--Sobic004G042300 Sobic003G329400 Sobic003G329400 Sobic006G052100--Sobic003G329400 Sobic003G305200 Sobic003G305200 Sobic006G052100--Sobic003G305200 Sobic009G193700 Sobic009G193700 Sobic006G052100--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic006G052100--Sobic008G062200 Sobic001G447500 Sobic001G447500 Sobic006G052100--Sobic001G447500 Sobic006G214500 Sobic006G214500 Sobic006G052100--Sobic006G214500 Sobic007G219900 Sobic007G219900 Sobic006G052100--Sobic007G219900 Sobic003G401200 Sobic003G401200 Sobic006G052100--Sobic003G401200 Sobic004G042300--Sobic006G052100 Sobic004G042300--Sobic009G193700 Sobic004G042300--Sobic008G062200 Sobic004G102400 Sobic004G102400 Sobic004G042300--Sobic004G102400 Sobic003G320700 Sobic003G320700 Sobic004G042300--Sobic003G320700 Sobic004G042300--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic004G042300--Sobic002G132000 Sobic001G089800 Sobic001G089800 Sobic004G042300--Sobic001G089800 Sobic001G290000 Sobic001G290000 Sobic004G042300--Sobic001G290000 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic007G024700 Sobic007G024700 Sobic003G305200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic003G305200--Sobic010G130200 Sobic001G427100 Sobic001G427100 Sobic003G305200--Sobic001G427100 Sobic006G083600 Sobic006G083600 Sobic003G305200--Sobic006G083600 Sobic003G305200--Sobic002G132000 Sobic004G295800 Sobic004G295800 Sobic003G305200--Sobic004G295800 Sobic009G094300 Sobic009G094300 Sobic003G305200--Sobic009G094300 Sobic002G270500 Sobic002G270500 Sobic003G305200--Sobic002G270500 Sobic003G305200--Sobic003G329400 Sobic009G193700--Sobic010G107000 Sobic009G193700--Sobic008G062200 Sobic009G211400 Sobic009G211400 Sobic009G193700--Sobic009G211400 Sobic003G355600 Sobic003G355600 Sobic009G193700--Sobic003G355600 Sobic009G029600 Sobic009G029600 Sobic009G193700--Sobic009G029600 Sobic004G260000 Sobic004G260000 Sobic009G193700--Sobic004G260000 Sobic003G219600 Sobic003G219600 Sobic009G193700--Sobic003G219600 Sobic006G199000 Sobic006G199000 Sobic009G193700--Sobic006G199000 Sobic009G193700--Sobic001G089800 Sobic008G062200--Sobic003G355600 Sobic008G062200--Sobic009G226300 Sobic008G062200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic008G062200--Sobic009G054500 Sobic008G062200--Sobic004G260000 Sobic008G062200--Sobic001G325200 Sobic004G101900 Sobic004G101900 Sobic008G062200--Sobic004G101900 Sobic008G062200--Sobic009G193700 Sobic008G062200--Sobic003G148800 Sobic001G156100 Sobic001G156100 Sobic001G447500--Sobic001G156100 Sobic001G447500--Sobic006G214500 Sobic001G447500--Sobic003G329400 Sobic001G447500--Sobic003G148800 Sobic001G447500--Sobic008G062200 Sobic001G447500--Sobic007G219900 Sobic003G407300 Sobic003G407300 Sobic001G447500--Sobic003G407300 Sobic009G121100 Sobic009G121100 Sobic001G447500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic001G447500--Sobic001G443900 Sobic006G214500--Sobic009G121100 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic008G160700 Sobic008G160700 Sobic006G214500--Sobic008G160700 Sobic010G078100 Sobic010G078100 Sobic006G214500--Sobic010G078100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic006G127100 Sobic006G127100 Sobic007G219900--Sobic006G127100 Sobic005G018500 Sobic005G018500 Sobic007G219900--Sobic005G018500 Sobic003G366400 Sobic003G366400 Sobic007G219900--Sobic003G366400 Sobic007G219900--Sobic009G054500 Sobic007G219900--Sobic003G148800 Sobic007G219900--Sobic004G260000 Sobic002G215700 Sobic002G215700 Sobic007G219900--Sobic002G215700 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic003G401200--Sobic003G366400 Sobic004G169700 Sobic004G169700 Sobic003G401200--Sobic004G169700 Sobic009G152700 Sobic009G152700 Sobic003G401200--Sobic009G152700 Sobic003G401200--Sobic008G062200 Sobic003G401200--Sobic003G219600 Sobic003G401200--Sobic001G227800 Sobic003G401200--Sobic009G211400 Sobic003G401200--Sobic003G329400 Sobic003G401200--Sobic002G215700
Octagon: transcription factors


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