Gene annotation
Transcriptome id Sobic.003G009100.1,Sobic.003G009100.2
Synonym Sb03g000970
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
peroxisomal membrane protein, putative, expressed
UniProt A0A1B6Q0Q3 , C5XJP9
Pfam PF04117
Panther DB PTHR11266 PTHR11266:SF35
NCBI CDD KOG1944; Peroxisomal membrane protein MPV17 and related proteins
KEGG Orthology K13348; protein Mpv17
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G24570 : Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein
RAP-DB (Rice) LOC_Os01g12800.1 : peroxisomal membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a035980
Brachypodium KQK03399
Barley HORVU3Hr1G031030.1 , HORVU3Hr1G031030.2 , HORVU3Hr1G031030.3 , HORVU3Hr1G031030.4 , HORVU3Hr1G031030.5 , HORVU3Hr1G031030.6 , HORVU3Hr1G031030.7
Wheat TraesCS3D02G160500 , TraesCS3B02G179800 , TraesCS3A02G153100
Populus -


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cDNA sequences
Sobic.003G009100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
2 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
3 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
4 Sobic.002G113300 expressed protein -
5 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
6 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
7 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
8 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
9 Sobic.006G192700 expressed protein -
10 Sobic.006G052100 nodulin, putative, expressed -
11 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
12 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
14 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
15 Sobic.004G349800 expressed protein -
16 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
17 Sobic.006G127100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@malate synthase, glyoxysomal, putative, expressed K01638: aceB, malate synthase
18 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
19 Sobic.001G124300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8


Gene co-expression network
sample Sobic003G009100 Sobic003G009100 Sobic001G023200 Sobic001G023200 Sobic003G009100--Sobic001G023200 Sobic003G354400 Sobic003G354400 Sobic003G009100--Sobic003G354400 Sobic005G150800 Sobic005G150800 Sobic003G009100--Sobic005G150800 Sobic002G113300 Sobic002G113300 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic004G203100 Sobic004G203100 Sobic003G009100--Sobic004G203100 Sobic006G192700 Sobic006G192700 Sobic003G009100--Sobic006G192700 Sobic001G023200--Sobic003G009100 Sobic002G258100 Sobic002G258100 Sobic001G023200--Sobic002G258100 Sobic001G010400 Sobic001G010400 Sobic001G023200--Sobic001G010400 Sobic004G347300 Sobic004G347300 Sobic001G023200--Sobic004G347300 Sobic001G393800 Sobic001G393800 Sobic001G023200--Sobic001G393800 Sobic001G023200--Sobic004G203100 Sobic010G016400 Sobic010G016400 Sobic001G023200--Sobic010G016400 Sobic001G023200--Sobic002G113300 Sobic007G106900 Sobic007G106900 Sobic001G023200--Sobic007G106900 Sobic003G061800 Sobic003G061800 Sobic003G354400--Sobic003G061800 Sobic003G329400 Sobic003G329400 Sobic003G354400--Sobic003G329400 Sobic009G057300 Sobic009G057300 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic009G126900 Sobic009G126900 Sobic003G354400--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic005G150800--Sobic004G102400 Sobic005G150800--Sobic001G393800 Sobic008G107500 Sobic008G107500 Sobic005G150800--Sobic008G107500 Sobic005G150800--Sobic003G009100 Sobic009G167700 Sobic009G167700 Sobic005G150800--Sobic009G167700 Sobic001G057800 Sobic001G057800 Sobic005G150800--Sobic001G057800 Sobic005G150800--Sobic003G354400 Sobic006G114800 Sobic006G114800 Sobic005G150800--Sobic006G114800 Sobic004G167400 Sobic004G167400 Sobic005G150800--Sobic004G167400 Sobic006G127100 Sobic006G127100 Sobic002G113300--Sobic006G127100 Sobic007G219900 Sobic007G219900 Sobic002G113300--Sobic007G219900 Sobic001G156100 Sobic001G156100 Sobic002G113300--Sobic001G156100 Sobic002G113300--Sobic003G009100 Sobic001G373100 Sobic001G373100 Sobic002G113300--Sobic001G373100 Sobic004G345800 Sobic004G345800 Sobic002G113300--Sobic004G345800 Sobic008G021800 Sobic008G021800 Sobic002G113300--Sobic008G021800 Sobic001G447500 Sobic001G447500 Sobic002G113300--Sobic001G447500 Sobic003G241000 Sobic003G241000 Sobic002G113300--Sobic003G241000 Sobic002G132000--Sobic004G006200 Sobic004G264400 Sobic004G264400 Sobic002G132000--Sobic004G264400 Sobic007G024700 Sobic007G024700 Sobic002G132000--Sobic007G024700 Sobic004G295800 Sobic004G295800 Sobic002G132000--Sobic004G295800 Sobic001G109800 Sobic001G109800 Sobic002G132000--Sobic001G109800 Sobic001G290000 Sobic001G290000 Sobic002G132000--Sobic001G290000 Sobic009G113000 Sobic009G113000 Sobic002G132000--Sobic009G113000 Sobic003G305200 Sobic003G305200 Sobic002G132000--Sobic003G305200 Sobic001G137100 Sobic001G137100 Sobic002G132000--Sobic001G137100 Sobic004G006200--Sobic002G132000 Sobic004G006200--Sobic004G295800 Sobic004G006200--Sobic007G024700 Sobic007G062600 Sobic007G062600 Sobic004G006200--Sobic007G062600 Sobic004G052900 Sobic004G052900 Sobic004G006200--Sobic004G052900 Sobic004G006200--Sobic004G264400 Sobic002G424000 Sobic002G424000 Sobic004G006200--Sobic002G424000 Sobic001G199100 Sobic001G199100 Sobic004G006200--Sobic001G199100 Sobic003G012200 Sobic003G012200 Sobic004G006200--Sobic003G012200 Sobic001G031200 Sobic001G031200 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic010G168600 Sobic010G168600 Sobic009G054700--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic004G034400 Sobic004G034400 Sobic009G054700--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic004G104900 Sobic004G104900 Sobic009G054700--Sobic004G104900 Sobic004G203100--Sobic010G168600 Sobic003G007500 Sobic003G007500 Sobic004G203100--Sobic003G007500 Sobic002G352700 Sobic002G352700 Sobic004G203100--Sobic002G352700 Sobic001G478300 Sobic001G478300 Sobic004G203100--Sobic001G478300 Sobic008G180900 Sobic008G180900 Sobic004G203100--Sobic008G180900 Sobic010G238700 Sobic010G238700 Sobic004G203100--Sobic010G238700 Sobic004G203100--Sobic009G054700 Sobic010G083700 Sobic010G083700 Sobic004G203100--Sobic010G083700 Sobic010G058900 Sobic010G058900 Sobic004G203100--Sobic010G058900 Sobic006G192700--Sobic001G057800 Sobic010G064600 Sobic010G064600 Sobic006G192700--Sobic010G064600 Sobic008G093000 Sobic008G093000 Sobic006G192700--Sobic008G093000 Sobic006G192700--Sobic004G006200 Sobic001G003000 Sobic001G003000 Sobic006G192700--Sobic001G003000 Sobic009G207000 Sobic009G207000 Sobic006G192700--Sobic009G207000 Sobic006G192700--Sobic003G009100 Sobic005G139400 Sobic005G139400 Sobic006G192700--Sobic005G139400 Sobic002G244100 Sobic002G244100 Sobic006G192700--Sobic002G244100
Octagon: transcription factors


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