Gene annotation
Transcriptome id Sobic.001G447500.2
Synonym BCAT3, Sb01g042040, ATBCAT-3
Functional annotation aminotransferase domain containing protein, putative, expressed
UniProt A0A1Z5SAL0
Pfam PF01063
Panther DB PTHR11825 PTHR11825:SF56
NCBI CDD KOG0975; Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
KEGG Orthology K00826; E2.6.1.42, branched-chain amino acid aminotransferase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G49680 : branched-chain aminotransferase 3
RAP-DB (Rice) LOC_Os03g12890.2 : aminotransferase domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001411
Brachypodium KQK22750 , KQK22748 , KQK22749
Barley HORVU0Hr1G008950.30 , HORVU0Hr1G008950.12 , HORVU0Hr1G008950.13 , HORVU0Hr1G008950.10 , HORVU0Hr1G008950.11 , HORVU0Hr1G008950.16 , HORVU0Hr1G008950.17 , HORVU0Hr1G008950.14 , HORVU0Hr1G008950.15 , HORVU0Hr1G008950.18 , HORVU0Hr1G008950.19 , HORVU0Hr1G008950.27 , HORVU0Hr1G008950.26 , HORVU0Hr1G008950.8 , HORVU0Hr1G008950.9 , HORVU0Hr1G008950.1 , HORVU0Hr1G008950.2 , HORVU0Hr1G008950.3 , HORVU0Hr1G008950.4 , HORVU0Hr1G008950.6 , HORVU0Hr1G008950.29 , HORVU0Hr1G008950.28 , HORVU0Hr1G008950.23 , HORVU0Hr1G008950.22 , HORVU0Hr1G008950.21 , HORVU0Hr1G008950.20 , HORVU0Hr1G008950.25 , HORVU0Hr1G008950.24
Wheat TraesCS4A02G059800 , TraesCS4B02G235400 , TraesCS4B02G235400 , TraesCS4B02G235400 , TraesCS4D02G236800
Populus -


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cDNA sequences
Sobic.001G447500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
2 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
3 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
4 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
5 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
6 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
7 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
8 Sobic.009G121100 expressed protein -
9 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
10 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
11 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
12 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
13 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
14 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
15 Sobic.006G052100 nodulin, putative, expressed -
16 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
18 Sobic.006G138400 regulatory subunit, putative, expressed -
19 Sobic.002G113300 expressed protein -
20 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase


Gene co-expression network
sample Sobic001G447500 Sobic001G447500 Sobic001G156100 Sobic001G156100 Sobic001G447500--Sobic001G156100 Sobic006G214500 Sobic006G214500 Sobic001G447500--Sobic006G214500 Sobic003G329400 Sobic003G329400 Sobic001G447500--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic001G447500--Sobic003G148800 Sobic008G062200 Sobic008G062200 Sobic001G447500--Sobic008G062200 Sobic007G219900 Sobic007G219900 Sobic001G447500--Sobic007G219900 Sobic003G407300 Sobic003G407300 Sobic001G447500--Sobic003G407300 Sobic009G121100 Sobic009G121100 Sobic001G447500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic001G447500--Sobic001G443900 Sobic001G156100--Sobic009G121100 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G373200 Sobic001G373200 Sobic001G156100--Sobic001G373200 Sobic004G295800 Sobic004G295800 Sobic001G156100--Sobic004G295800 Sobic006G214500--Sobic009G121100 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic006G214500--Sobic008G160700 Sobic010G078100 Sobic010G078100 Sobic006G214500--Sobic010G078100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic001G325200 Sobic001G325200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic002G304000 Sobic002G304000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic009G226300 Sobic009G226300 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic003G148800--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic004G321800 Sobic004G321800 Sobic003G148800--Sobic004G321800 Sobic003G148800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic003G148800--Sobic005G018500 Sobic001G150600 Sobic001G150600 Sobic003G148800--Sobic001G150600 Sobic006G100332 Sobic006G100332 Sobic003G148800--Sobic006G100332 Sobic006G030700 Sobic006G030700 Sobic003G148800--Sobic006G030700 Sobic003G355600 Sobic003G355600 Sobic008G062200--Sobic003G355600 Sobic008G062200--Sobic009G226300 Sobic008G062200--Sobic002G304000 Sobic008G062200--Sobic009G054500 Sobic004G260000 Sobic004G260000 Sobic008G062200--Sobic004G260000 Sobic008G062200--Sobic001G325200 Sobic004G101900 Sobic004G101900 Sobic008G062200--Sobic004G101900 Sobic009G193700 Sobic009G193700 Sobic008G062200--Sobic009G193700 Sobic008G062200--Sobic003G148800 Sobic006G127100 Sobic006G127100 Sobic007G219900--Sobic006G127100 Sobic007G219900--Sobic005G018500 Sobic003G366400 Sobic003G366400 Sobic007G219900--Sobic003G366400 Sobic007G219900--Sobic009G054500 Sobic007G219900--Sobic003G148800 Sobic007G219900--Sobic004G260000 Sobic002G215700 Sobic002G215700 Sobic007G219900--Sobic002G215700 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic003G407300--Sobic003G019100 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic007G024700 Sobic007G024700 Sobic003G407300--Sobic007G024700 Sobic009G121100--Sobic006G214500 Sobic009G121100--Sobic003G407300 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic009G121100--Sobic001G443900 Sobic009G121100--Sobic001G373200 Sobic009G121100--Sobic010G078100 Sobic009G121100--Sobic004G295800 Sobic009G121100--Sobic002G303000 Sobic001G443900--Sobic006G214500 Sobic001G443900--Sobic009G121100 Sobic003G005800 Sobic003G005800 Sobic001G443900--Sobic003G005800 Sobic001G443900--Sobic001G373200 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G443900--Sobic001G447500 Sobic001G443900--Sobic001G156100 Sobic001G443900--Sobic009G229800
Octagon: transcription factors


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