Gene annotation
Transcriptome id Sobic.003G401200.1
Synonym Sb03g043750, SBP1
Functional annotation selenium-binding protein, putative, expressed
UniProt C5XG77
Pfam PF05694
Panther DB PTHR23300
NCBI CDD -
KEGG Orthology K17285; methanethiol oxidase
Gene Ontology GO:0008430; selenium binding


Orthologs (automatic annotation)
TAIR AT4G14030 : selenium-binding protein 1
RAP-DB (Rice) LOC_Os01g68770.1 : selenium-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a036010 , Zm00025a026294 , Zm00025a050160
Brachypodium KQK11188 , KQK11189
Barley HORVU3Hr1G093350.1 , HORVU3Hr1G093350.3 , HORVU3Hr1G093350.2 , HORVU3Hr1G093350.5 , HORVU3Hr1G093350.4 , HORVU3Hr1G093350.6
Wheat TraesCS3D02G417500 , TraesCS3A02G422100 , TraesCS3B02G457600 , TraesCS3B02G457600 , TraesCS3B02G457600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G401200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
2 Sobic.004G169700 - -
3 Sobic.009G152700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@fructose-1,6-bisphosphatase, putative, expressed K03841: FBP, fructose-1,6-bisphosphatase I
4 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
5 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
6 Sobic.001G227800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
7 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
9 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
10 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
11 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
12 Sobic.006G052100 nodulin, putative, expressed -
13 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
14 Sobic.006G058600 AML1, putative, expressed -
15 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
17 Sobic.008G017800 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
18 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
19 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
20 Sobic.010G043400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G401200 Sobic003G401200 Sobic003G366400 Sobic003G366400 Sobic003G401200--Sobic003G366400 Sobic004G169700 Sobic004G169700 Sobic003G401200--Sobic004G169700 Sobic009G152700 Sobic009G152700 Sobic003G401200--Sobic009G152700 Sobic008G062200 Sobic008G062200 Sobic003G401200--Sobic008G062200 Sobic003G219600 Sobic003G219600 Sobic003G401200--Sobic003G219600 Sobic001G227800 Sobic001G227800 Sobic003G401200--Sobic001G227800 Sobic009G211400 Sobic009G211400 Sobic003G401200--Sobic009G211400 Sobic003G329400 Sobic003G329400 Sobic003G401200--Sobic003G329400 Sobic002G215700 Sobic002G215700 Sobic003G401200--Sobic002G215700 Sobic007G219900 Sobic007G219900 Sobic003G366400--Sobic007G219900 Sobic003G366400--Sobic003G401200 Sobic003G366400--Sobic002G215700 Sobic004G260000 Sobic004G260000 Sobic003G366400--Sobic004G260000 Sobic003G366400--Sobic001G227800 Sobic004G246200 Sobic004G246200 Sobic003G366400--Sobic004G246200 Sobic005G018500 Sobic005G018500 Sobic003G366400--Sobic005G018500 Sobic004G101900 Sobic004G101900 Sobic003G366400--Sobic004G101900 Sobic003G366400--Sobic009G211400 Sobic004G169700--Sobic003G401200 Sobic004G169700--Sobic004G260000 Sobic004G169700--Sobic007G219900 Sobic004G304200 Sobic004G304200 Sobic004G169700--Sobic004G304200 Sobic003G216000 Sobic003G216000 Sobic004G169700--Sobic003G216000 Sobic006G140000 Sobic006G140000 Sobic004G169700--Sobic006G140000 Sobic004G169700--Sobic003G366400 Sobic004G169700--Sobic005G018500 Sobic004G169700--Sobic004G246200 Sobic009G152700--Sobic003G401200 Sobic001G447500 Sobic001G447500 Sobic009G152700--Sobic001G447500 Sobic009G152700--Sobic003G366400 Sobic009G152700--Sobic008G062200 Sobic006G214500 Sobic006G214500 Sobic009G152700--Sobic006G214500 Sobic009G126900 Sobic009G126900 Sobic009G152700--Sobic009G126900 Sobic004G042300 Sobic004G042300 Sobic009G152700--Sobic004G042300 Sobic009G152700--Sobic003G329400 Sobic002G132000 Sobic002G132000 Sobic009G152700--Sobic002G132000 Sobic003G355600 Sobic003G355600 Sobic008G062200--Sobic003G355600 Sobic009G226300 Sobic009G226300 Sobic008G062200--Sobic009G226300 Sobic002G304000 Sobic002G304000 Sobic008G062200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic008G062200--Sobic009G054500 Sobic008G062200--Sobic004G260000 Sobic001G325200 Sobic001G325200 Sobic008G062200--Sobic001G325200 Sobic008G062200--Sobic004G101900 Sobic009G193700 Sobic009G193700 Sobic008G062200--Sobic009G193700 Sobic003G148800 Sobic003G148800 Sobic008G062200--Sobic003G148800 Sobic003G219600--Sobic009G211400 Sobic009G029600 Sobic009G029600 Sobic003G219600--Sobic009G029600 Sobic003G259200 Sobic003G259200 Sobic003G219600--Sobic003G259200 Sobic003G219600--Sobic009G054500 Sobic003G219600--Sobic005G018500 Sobic004G255000 Sobic004G255000 Sobic003G219600--Sobic004G255000 Sobic001G249300 Sobic001G249300 Sobic003G219600--Sobic001G249300 Sobic003G219600--Sobic004G260000 Sobic003G219600--Sobic009G226300 Sobic001G227800--Sobic002G215700 Sobic001G227800--Sobic009G226300 Sobic001G227800--Sobic009G054500 Sobic007G187300 Sobic007G187300 Sobic001G227800--Sobic007G187300 Sobic001G227800--Sobic003G259200 Sobic001G227800--Sobic002G304000 Sobic001G227800--Sobic005G018500 Sobic006G100332 Sobic006G100332 Sobic001G227800--Sobic006G100332 Sobic001G227800--Sobic003G219600 Sobic009G211400--Sobic003G219600 Sobic010G107000 Sobic010G107000 Sobic009G211400--Sobic010G107000 Sobic009G211400--Sobic009G029600 Sobic003G138200 Sobic003G138200 Sobic009G211400--Sobic003G138200 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G211400--Sobic009G193700 Sobic009G211400--Sobic005G018500 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic007G068100 Sobic007G068100 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic002G215700--Sobic001G227800 Sobic002G215700--Sobic009G054500 Sobic002G215700--Sobic009G226300 Sobic002G215700--Sobic004G101900 Sobic002G215700--Sobic002G304000 Sobic002G215700--Sobic006G100332 Sobic002G215700--Sobic003G138200 Sobic002G215700--Sobic003G148800 Sobic002G215700--Sobic005G018500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.