Gene annotation
Transcriptome id Sobic.008G017800.1
Synonym ATASD1, ARAF1, ASD1, Sb08g001540, ARAF
Functional annotation alpha-N-arabinofuranosidase A, putative, expressed
UniProt C5YQN5
Pfam PF06964
Panther DB PTHR31776 PTHR31776:SF0
NCBI CDD -
KEGG Orthology K01209; alpha-L-arabinofuranosidase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10740 : alpha-L-arabinofuranosidase 1
RAP-DB (Rice) LOC_Os11g03730.2 : alpha-N-arabinofuranosidase A, putative, expressed
MaizeGDB (Corn) Zm00025a028968 , Zm00025a000835 , Zm00025a033391 , Zm00025a038411 , Zm00025a029540
Brachypodium KQJ89534 , KQJ89533 , KQJ92445 , KQJ92444
Barley HORVU3Hr1G113160.11 , HORVU3Hr1G113160.10 , HORVU3Hr1G113160.5 , HORVU3Hr1G113160.4 , HORVU3Hr1G113160.7 , HORVU3Hr1G113160.6 , HORVU3Hr1G113160.1 , HORVU3Hr1G113160.3 , HORVU3Hr1G113160.2 , HORVU3Hr1G113160.9 , HORVU3Hr1G113160.8 , HORVU5Hr1G045150.8 , HORVU5Hr1G045150.9 , HORVU5Hr1G045150.6 , HORVU5Hr1G045150.7 , HORVU5Hr1G045150.4 , HORVU5Hr1G045150.2 , HORVU5Hr1G045150.3 , HORVU5Hr1G045150.1 , HORVU5Hr1G045150.18 , HORVU5Hr1G045150.14 , HORVU5Hr1G045150.15 , HORVU5Hr1G045150.16 , HORVU5Hr1G045150.17 , HORVU5Hr1G045150.10 , HORVU5Hr1G045150.11 , HORVU5Hr1G045150.12 , HORVU5Hr1G045150.13 , HORVU4Hr1G026720.9 , HORVU4Hr1G026720.8 , HORVU4Hr1G026720.3 , HORVU4Hr1G026720.2 , HORVU4Hr1G026720.1 , HORVU4Hr1G026720.7 , HORVU4Hr1G026720.6 , HORVU4Hr1G026720.5 , HORVU4Hr1G026720.4
Wheat TraesCS5A02G138400 , TraesCS5A02G138400 , TraesCS4A02G188300 , TraesCS4A02G188300 , TraesCS4A02G188300 , TraesCS4B02G127600 , TraesCS4B02G127600 , TraesCS4B02G127600 , TraesCS5B02G138700 , TraesCS5B02G138700 , TraesCS5D02G152100 , TraesCS5D02G152100 , TraesCS4D02G125100 , TraesCS4D02G125100 , TraesCS4D02G125100
Populus -


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cDNA sequences
Sobic.008G017800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
2 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
3 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
4 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
5 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
6 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
8 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
9 Sobic.009G057300 acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
10 Sobic.001G111150 - K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
11 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.003G317400 Diacylglycerol kinase DGK (Os)(PubMedID : 27208977)@diacylglycerol kinase, putative, expressed K04718: sphingosine kinase
13 Sobic.001G176600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
15 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
17 Sobic.002G215700 similar to Aldehyde dehydrogenase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Aldehyde dehydrogenase B4(PubMedID : 26320239)@Zinc finger(C3H4-type Ring finger) family protein(PubMedID : 26320239)@a glutamate S-semialdehyde dehydrogenase(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K14085: aldehyde dehydrogenase family 7 member A1
18 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
19 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
20 Sobic.003G010600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase


Gene co-expression network
sample Sobic008G017800 Sobic008G017800 Sobic007G068100 Sobic007G068100 Sobic008G017800--Sobic007G068100 Sobic001G325200 Sobic001G325200 Sobic008G017800--Sobic001G325200 Sobic003G329400 Sobic003G329400 Sobic008G017800--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic008G017800--Sobic003G148800 Sobic001G474500 Sobic001G474500 Sobic008G017800--Sobic001G474500 Sobic009G211400 Sobic009G211400 Sobic008G017800--Sobic009G211400 Sobic003G366400 Sobic003G366400 Sobic008G017800--Sobic003G366400 Sobic007G219900 Sobic007G219900 Sobic008G017800--Sobic007G219900 Sobic009G057300 Sobic009G057300 Sobic008G017800--Sobic009G057300 Sobic007G068100--Sobic001G325200 Sobic007G068100--Sobic001G474500 Sobic003G388251 Sobic003G388251 Sobic007G068100--Sobic003G388251 Sobic007G068100--Sobic003G148800 Sobic007G068100--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic007G068100--Sobic004G101900 Sobic003G428400 Sobic003G428400 Sobic007G068100--Sobic003G428400 Sobic009G226300 Sobic009G226300 Sobic007G068100--Sobic009G226300 Sobic004G321800 Sobic004G321800 Sobic007G068100--Sobic004G321800 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic001G325200--Sobic003G148800 Sobic001G325200--Sobic004G321800 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic009G054500 Sobic009G054500 Sobic001G325200--Sobic009G054500 Sobic001G015500 Sobic001G015500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic001G322700 Sobic001G322700 Sobic003G329400--Sobic001G322700 Sobic008G062200 Sobic008G062200 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic010G107000 Sobic010G107000 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400 Sobic003G148800--Sobic009G226300 Sobic003G148800--Sobic009G054500 Sobic003G148800--Sobic001G325200 Sobic003G148800--Sobic004G321800 Sobic003G148800--Sobic002G304000 Sobic005G018500 Sobic005G018500 Sobic003G148800--Sobic005G018500 Sobic001G150600 Sobic001G150600 Sobic003G148800--Sobic001G150600 Sobic006G100332 Sobic006G100332 Sobic003G148800--Sobic006G100332 Sobic006G030700 Sobic006G030700 Sobic003G148800--Sobic006G030700 Sobic001G474500--Sobic007G068100 Sobic001G474500--Sobic001G325200 Sobic001G474500--Sobic009G057300 Sobic004G060900 Sobic004G060900 Sobic001G474500--Sobic004G060900 Sobic001G474500--Sobic003G388251 Sobic001G474500--Sobic004G321800 Sobic001G474500--Sobic003G428400 Sobic001G130000 Sobic001G130000 Sobic001G474500--Sobic001G130000 Sobic009G034700 Sobic009G034700 Sobic001G474500--Sobic009G034700 Sobic003G219600 Sobic003G219600 Sobic009G211400--Sobic003G219600 Sobic009G211400--Sobic010G107000 Sobic009G029600 Sobic009G029600 Sobic009G211400--Sobic009G029600 Sobic003G138200 Sobic003G138200 Sobic009G211400--Sobic003G138200 Sobic004G260000 Sobic004G260000 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G193700 Sobic009G193700 Sobic009G211400--Sobic009G193700 Sobic009G211400--Sobic005G018500 Sobic003G366400--Sobic007G219900 Sobic003G401200 Sobic003G401200 Sobic003G366400--Sobic003G401200 Sobic002G215700 Sobic002G215700 Sobic003G366400--Sobic002G215700 Sobic003G366400--Sobic004G260000 Sobic001G227800 Sobic001G227800 Sobic003G366400--Sobic001G227800 Sobic004G246200 Sobic004G246200 Sobic003G366400--Sobic004G246200 Sobic003G366400--Sobic005G018500 Sobic003G366400--Sobic004G101900 Sobic003G366400--Sobic009G211400 Sobic006G127100 Sobic006G127100 Sobic007G219900--Sobic006G127100 Sobic007G219900--Sobic005G018500 Sobic007G219900--Sobic003G366400 Sobic007G219900--Sobic009G054500 Sobic007G219900--Sobic003G148800 Sobic007G219900--Sobic004G260000 Sobic007G219900--Sobic002G215700 Sobic007G219900--Sobic009G226300 Sobic007G219900--Sobic001G227800 Sobic003G061800 Sobic003G061800 Sobic009G057300--Sobic003G061800 Sobic009G057300--Sobic001G474500 Sobic009G057300--Sobic007G068100 Sobic009G057300--Sobic001G325200 Sobic009G057300--Sobic003G388251 Sobic009G057300--Sobic003G329400 Sobic009G057300--Sobic003G354400 Sobic001G334600 Sobic001G334600 Sobic009G057300--Sobic001G334600 Sobic009G057300--Sobic001G322700
Octagon: transcription factors


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