Gene annotation
Transcriptome id Sobic.003G010600.1
Synonym NYC1, Sb03g001100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5XK97 , H0I4C9
Pfam PF13561
Panther DB PTHR24314 PTHR24314:SF10
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K13606; NOL, chlorophyll(ide) b reductase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13250 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os01g12710.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046546 , Zm00025a022842
Brachypodium KQK03390
Barley HORVU3Hr1G030890.1 , HORVU3Hr1G030890.2
Wheat TraesCS3D02G159800 , TraesCS3D02G159800 , TraesCS3B02G179100 , TraesCS3A02G151900
Populus -


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cDNA sequences
Sobic.003G010600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G325200 Expressed in drought and oxidative stress(PubMedID : 29862293)@aldehyde oxidase, putative, expressed K00106: xanthine dehydrogenase/oxidase
2 Sobic.009G226300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.004G260000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.009G054500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@lipase, putative, expressed -
5 Sobic.009G211400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
6 Sobic.008G062200 dehydrogenase E1 component domain containing protein, expressed K00166: BCKDHA, 2-oxoisovalerate dehydrogenase E1 component alpha subunit
7 Sobic.006G100332 - -
8 Sobic.005G018500 NAC domain transcription factor, putative, expressed -
9 Sobic.003G219600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ThiF family domain containing protein, putative, expressed K08337: ubiquitin-like modifier-activating enzyme ATG7
10 Sobic.003G355600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.009G029600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed K01919: glutamate--cysteine ligase
12 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
13 Sobic.010G107000 phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
14 Sobic.007G187300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G150600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K13606: NOL, chlorophyll(ide) b reductase
16 Sobic.003G138200 expressed protein -
17 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
18 Sobic.009G193700 transmembrane protein 56, putative, expressed -
19 Sobic.003G259200 -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed K15918: D-glycerate 3-kinase
20 Sobic.006G030700 receptor kinase, putative, expressed -


Gene co-expression network
sample Sobic003G010600 Sobic003G010600 Sobic001G325200 Sobic001G325200 Sobic003G010600--Sobic001G325200 Sobic009G226300 Sobic009G226300 Sobic003G010600--Sobic009G226300 Sobic004G260000 Sobic004G260000 Sobic003G010600--Sobic004G260000 Sobic009G054500 Sobic009G054500 Sobic003G010600--Sobic009G054500 Sobic009G211400 Sobic009G211400 Sobic003G010600--Sobic009G211400 Sobic008G062200 Sobic008G062200 Sobic003G010600--Sobic008G062200 Sobic006G100332 Sobic006G100332 Sobic003G010600--Sobic006G100332 Sobic005G018500 Sobic005G018500 Sobic003G010600--Sobic005G018500 Sobic003G219600 Sobic003G219600 Sobic003G010600--Sobic003G219600 Sobic007G068100 Sobic007G068100 Sobic001G325200--Sobic007G068100 Sobic001G325200--Sobic009G226300 Sobic003G148800 Sobic003G148800 Sobic001G325200--Sobic003G148800 Sobic004G321800 Sobic004G321800 Sobic001G325200--Sobic004G321800 Sobic004G101900 Sobic004G101900 Sobic001G325200--Sobic004G101900 Sobic002G304000 Sobic002G304000 Sobic001G325200--Sobic002G304000 Sobic001G325200--Sobic009G054500 Sobic001G015500 Sobic001G015500 Sobic001G325200--Sobic001G015500 Sobic003G355600 Sobic003G355600 Sobic001G325200--Sobic003G355600 Sobic009G226300--Sobic009G054500 Sobic001G249300 Sobic001G249300 Sobic009G226300--Sobic001G249300 Sobic007G187300 Sobic007G187300 Sobic009G226300--Sobic007G187300 Sobic006G030700 Sobic006G030700 Sobic009G226300--Sobic006G030700 Sobic009G226300--Sobic003G148800 Sobic009G226300--Sobic006G100332 Sobic009G226300--Sobic001G325200 Sobic009G226300--Sobic002G304000 Sobic009G226300--Sobic004G260000 Sobic004G260000--Sobic005G018500 Sobic004G260000--Sobic009G054500 Sobic004G260000--Sobic009G226300 Sobic004G255000 Sobic004G255000 Sobic004G260000--Sobic004G255000 Sobic004G260000--Sobic001G249300 Sobic004G260000--Sobic008G062200 Sobic004G260000--Sobic007G187300 Sobic004G260000--Sobic003G219600 Sobic004G260000--Sobic009G211400 Sobic009G054500--Sobic009G226300 Sobic009G054500--Sobic005G018500 Sobic009G054500--Sobic001G249300 Sobic009G054500--Sobic004G260000 Sobic009G054500--Sobic003G148800 Sobic003G259200 Sobic003G259200 Sobic009G054500--Sobic003G259200 Sobic009G054500--Sobic007G187300 Sobic009G054500--Sobic006G100332 Sobic002G215700 Sobic002G215700 Sobic009G054500--Sobic002G215700 Sobic009G211400--Sobic003G219600 Sobic010G107000 Sobic010G107000 Sobic009G211400--Sobic010G107000 Sobic009G029600 Sobic009G029600 Sobic009G211400--Sobic009G029600 Sobic003G138200 Sobic003G138200 Sobic009G211400--Sobic003G138200 Sobic009G211400--Sobic004G260000 Sobic002G215800 Sobic002G215800 Sobic009G211400--Sobic002G215800 Sobic009G211400--Sobic009G054500 Sobic009G193700 Sobic009G193700 Sobic009G211400--Sobic009G193700 Sobic009G211400--Sobic005G018500 Sobic008G062200--Sobic003G355600 Sobic008G062200--Sobic009G226300 Sobic008G062200--Sobic002G304000 Sobic008G062200--Sobic009G054500 Sobic008G062200--Sobic004G260000 Sobic008G062200--Sobic001G325200 Sobic008G062200--Sobic004G101900 Sobic008G062200--Sobic009G193700 Sobic008G062200--Sobic003G148800 Sobic001G150600 Sobic001G150600 Sobic006G100332--Sobic001G150600 Sobic003G087200 Sobic003G087200 Sobic006G100332--Sobic003G087200 Sobic006G100332--Sobic009G226300 Sobic006G100332--Sobic009G054500 Sobic006G100332--Sobic004G321800 Sobic006G100332--Sobic007G187300 Sobic006G100332--Sobic006G030700 Sobic006G100332--Sobic001G249300 Sobic006G100332--Sobic003G148800 Sobic005G018500--Sobic009G054500 Sobic005G018500--Sobic004G260000 Sobic005G018500--Sobic004G255000 Sobic005G018500--Sobic003G259200 Sobic005G018500--Sobic009G226300 Sobic005G018500--Sobic001G249300 Sobic005G018500--Sobic003G148800 Sobic005G018500--Sobic003G219600 Sobic005G018500--Sobic007G187300 Sobic003G219600--Sobic009G211400 Sobic003G219600--Sobic009G029600 Sobic003G219600--Sobic003G259200 Sobic003G219600--Sobic009G054500 Sobic003G219600--Sobic005G018500 Sobic003G219600--Sobic004G255000 Sobic003G219600--Sobic001G249300 Sobic003G219600--Sobic004G260000 Sobic003G219600--Sobic009G226300
Octagon: transcription factors


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