Gene annotation
Transcriptome id Sobic.002G245300.1
Synonym Sb02g028200, TDT, ATTDT, ATSDAT
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
citrate transporter, putative, expressed
UniProt C5X3V3
Pfam PF03600
Panther DB PTHR10283 PTHR10283:SF101
NCBI CDD KOG1281; Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters
KEGG Orthology K14445; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G47560 : tonoplast dicarboxylate transporter
RAP-DB (Rice) LOC_Os09g31130.1 : citrate transporter, putative, expressed
MaizeGDB (Corn) Zm00025a047433 , Zm00025a028299
Brachypodium KQJ90730
Barley HORVU5Hr1G092230.3 , HORVU5Hr1G092230.2 , HORVU5Hr1G092230.1 , HORVU5Hr1G092230.5 , HORVU5Hr1G092230.4 , HORVU5Hr1G072780.11 , HORVU5Hr1G072780.10 , HORVU5Hr1G072780.13 , HORVU5Hr1G072780.12 , HORVU5Hr1G072780.15 , HORVU5Hr1G072780.14 , HORVU7Hr1G050030.3 , HORVU7Hr1G050030.2 , HORVU7Hr1G050030.5 , HORVU7Hr1G050030.4 , HORVU7Hr1G050030.7 , HORVU7Hr1G050030.9 , HORVU7Hr1G050030.14 , HORVU7Hr1G050030.11 , HORVU7Hr1G050030.13 , HORVU7Hr1G050030.12 , HORVU5Hr1G072780.5 , HORVU5Hr1G072780.4 , HORVU5Hr1G072780.7 , HORVU5Hr1G072780.6 , HORVU5Hr1G072780.1 , HORVU5Hr1G072780.3 , HORVU5Hr1G072780.2 , HORVU5Hr1G072780.9 , HORVU5Hr1G072780.8
Wheat TraesCS5B02G261800 , TraesCS7D02G243000 , TraesCS5A02G263100 , TraesCS5B02G262500 , TraesCS7A02G244400 , TraesCS5D02G270600 , TraesCS5B02G261500 , TraesCS3A02G183800 , TraesCS3D02G188000 , TraesCS3B02G213600 , TraesCSU02G096900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G052100 nodulin, putative, expressed -
2 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
3 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
4 Sobic.007G219900 uncharacterized glycosyltransferase, putative, expressed K06617: raffinose synthase
5 Sobic.001G148300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
7 Sobic.004G169700 - -
8 Sobic.003G401200 selenium-binding protein, putative, expressed K17285: methanethiol oxidase
9 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
10 Sobic.007G154701 - -
11 Sobic.003G305400 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
12 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
13 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
14 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
15 Sobic.002G113300 expressed protein -
16 Sobic.003G156300 expressed protein -
17 Sobic.003G045100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane protein, putative, expressed -
18 Sobic.003G366400 uricase, putative, expressed K00365: urate oxidase
19 Sobic.006G140000 receptor-like protein kinase precursor, putative, expressed -
20 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase


Gene co-expression network
sample Sobic002G245300 Sobic002G245300 Sobic006G052100 Sobic006G052100 Sobic002G245300--Sobic006G052100 Sobic010G078100 Sobic010G078100 Sobic002G245300--Sobic010G078100 Sobic003G009100 Sobic003G009100 Sobic002G245300--Sobic003G009100 Sobic007G219900 Sobic007G219900 Sobic002G245300--Sobic007G219900 Sobic001G148300 Sobic001G148300 Sobic002G245300--Sobic001G148300 Sobic001G447500 Sobic001G447500 Sobic002G245300--Sobic001G447500 Sobic004G169700 Sobic004G169700 Sobic002G245300--Sobic004G169700 Sobic003G401200 Sobic003G401200 Sobic002G245300--Sobic003G401200 Sobic006G214500 Sobic006G214500 Sobic002G245300--Sobic006G214500 Sobic004G042300 Sobic004G042300 Sobic006G052100--Sobic004G042300 Sobic003G329400 Sobic003G329400 Sobic006G052100--Sobic003G329400 Sobic003G305200 Sobic003G305200 Sobic006G052100--Sobic003G305200 Sobic009G193700 Sobic009G193700 Sobic006G052100--Sobic009G193700 Sobic008G062200 Sobic008G062200 Sobic006G052100--Sobic008G062200 Sobic006G052100--Sobic001G447500 Sobic006G052100--Sobic006G214500 Sobic006G052100--Sobic007G219900 Sobic006G052100--Sobic003G401200 Sobic008G160700 Sobic008G160700 Sobic010G078100--Sobic008G160700 Sobic002G303000 Sobic002G303000 Sobic010G078100--Sobic002G303000 Sobic009G121100 Sobic009G121100 Sobic010G078100--Sobic009G121100 Sobic010G078100--Sobic006G214500 Sobic009G027000 Sobic009G027000 Sobic010G078100--Sobic009G027000 Sobic001G359400 Sobic001G359400 Sobic010G078100--Sobic001G359400 Sobic001G373100 Sobic001G373100 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic004G295800 Sobic004G295800 Sobic010G078100--Sobic004G295800 Sobic001G023200 Sobic001G023200 Sobic003G009100--Sobic001G023200 Sobic003G354400 Sobic003G354400 Sobic003G009100--Sobic003G354400 Sobic005G150800 Sobic005G150800 Sobic003G009100--Sobic005G150800 Sobic002G113300 Sobic002G113300 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic004G203100 Sobic004G203100 Sobic003G009100--Sobic004G203100 Sobic006G192700 Sobic006G192700 Sobic003G009100--Sobic006G192700 Sobic006G127100 Sobic006G127100 Sobic007G219900--Sobic006G127100 Sobic005G018500 Sobic005G018500 Sobic007G219900--Sobic005G018500 Sobic003G366400 Sobic003G366400 Sobic007G219900--Sobic003G366400 Sobic009G054500 Sobic009G054500 Sobic007G219900--Sobic009G054500 Sobic003G148800 Sobic003G148800 Sobic007G219900--Sobic003G148800 Sobic004G260000 Sobic004G260000 Sobic007G219900--Sobic004G260000 Sobic002G215700 Sobic002G215700 Sobic007G219900--Sobic002G215700 Sobic009G226300 Sobic009G226300 Sobic007G219900--Sobic009G226300 Sobic001G227800 Sobic001G227800 Sobic007G219900--Sobic001G227800 Sobic002G258100 Sobic002G258100 Sobic001G148300--Sobic002G258100 Sobic001G148300--Sobic001G023200 Sobic008G107500 Sobic008G107500 Sobic001G148300--Sobic008G107500 Sobic003G182800 Sobic003G182800 Sobic001G148300--Sobic003G182800 Sobic003G379700 Sobic003G379700 Sobic001G148300--Sobic003G379700 Sobic009G177400 Sobic009G177400 Sobic001G148300--Sobic009G177400 Sobic001G148300--Sobic004G203100 Sobic008G097401 Sobic008G097401 Sobic001G148300--Sobic008G097401 Sobic001G330700 Sobic001G330700 Sobic001G148300--Sobic001G330700 Sobic001G156100 Sobic001G156100 Sobic001G447500--Sobic001G156100 Sobic001G447500--Sobic006G214500 Sobic001G447500--Sobic003G329400 Sobic001G447500--Sobic003G148800 Sobic001G447500--Sobic008G062200 Sobic001G447500--Sobic007G219900 Sobic003G407300 Sobic003G407300 Sobic001G447500--Sobic003G407300 Sobic001G447500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic001G447500--Sobic001G443900 Sobic004G169700--Sobic003G401200 Sobic004G169700--Sobic004G260000 Sobic004G169700--Sobic007G219900 Sobic004G304200 Sobic004G304200 Sobic004G169700--Sobic004G304200 Sobic003G216000 Sobic003G216000 Sobic004G169700--Sobic003G216000 Sobic006G140000 Sobic006G140000 Sobic004G169700--Sobic006G140000 Sobic004G169700--Sobic003G366400 Sobic004G169700--Sobic005G018500 Sobic004G246200 Sobic004G246200 Sobic004G169700--Sobic004G246200 Sobic003G401200--Sobic003G366400 Sobic003G401200--Sobic004G169700 Sobic009G152700 Sobic009G152700 Sobic003G401200--Sobic009G152700 Sobic003G401200--Sobic008G062200 Sobic003G219600 Sobic003G219600 Sobic003G401200--Sobic003G219600 Sobic003G401200--Sobic001G227800 Sobic009G211400 Sobic009G211400 Sobic003G401200--Sobic009G211400 Sobic003G401200--Sobic003G329400 Sobic003G401200--Sobic002G215700 Sobic006G214500--Sobic009G121100 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic006G214500--Sobic008G160700 Sobic006G214500--Sobic010G078100 Sobic006G214500--Sobic001G156100 Sobic006G214500--Sobic003G407300 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200
Octagon: transcription factors


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