Gene annotation
Transcriptome id Sobic.003G045100.1
Synonym Sb03g003960
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
transmembrane protein, putative, expressed
UniProt C5XMS2
Pfam PF01940
Panther DB PTHR13353 PTHR13353:SF8
NCBI CDD KOG4491; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G19930 : Protein of unknown function DUF92, transmembrane
RAP-DB (Rice) LOC_Os01g08290.1 : transmembrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a023198
Brachypodium KQK02996
Barley HORVU3Hr1G022590.9 , HORVU3Hr1G022590.8 , HORVU3Hr1G022590.7 , HORVU3Hr1G022590.6 , HORVU3Hr1G022590.5 , HORVU3Hr1G022590.4 , HORVU3Hr1G022590.3 , HORVU3Hr1G022590.2 , HORVU3Hr1G022590.1 , HORVU3Hr1G022590.17 , HORVU3Hr1G022590.16 , HORVU3Hr1G022590.15 , HORVU3Hr1G022590.14 , HORVU3Hr1G022590.13 , HORVU3Hr1G022590.12 , HORVU3Hr1G022590.11 , HORVU3Hr1G022590.10
Wheat TraesCS3B02G140900 , TraesCS3B02G140900 , TraesCS3A02G121500 , TraesCS3D02G123600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
2 Sobic.003G009100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxisomal membrane protein, putative, expressed K13348: protein Mpv17
3 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
4 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
5 Sobic.003G241000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CTP synthase, putative, expressed K01937: pyrG, CTP synthase
6 Sobic.009G121100 expressed protein -
7 Sobic.007G205900 uvrB/uvrC motif family protein, expressed -
8 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
9 Sobic.004G330900 Positive cytokinine regulator(PubMedID : 30367619)@two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
10 Sobic.001G427100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
11 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
12 Sobic.007G202600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio domain-containing protein PPD1, putative, expressed K17943: pumilio RNA-binding family
13 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
14 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
15 Sobic.007G002200 glycine-rich RNA-binding protein 7, putative, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
16 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
17 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
18 Sobic.006G138400 regulatory subunit, putative, expressed -
19 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
20 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -


Gene co-expression network
sample Sobic003G045100 Sobic003G045100 Sobic001G443900 Sobic001G443900 Sobic003G045100--Sobic001G443900 Sobic003G009100 Sobic003G009100 Sobic003G045100--Sobic003G009100 Sobic010G145900 Sobic010G145900 Sobic003G045100--Sobic010G145900 Sobic003G005800 Sobic003G005800 Sobic003G045100--Sobic003G005800 Sobic003G241000 Sobic003G241000 Sobic003G045100--Sobic003G241000 Sobic009G121100 Sobic009G121100 Sobic003G045100--Sobic009G121100 Sobic007G205900 Sobic007G205900 Sobic003G045100--Sobic007G205900 Sobic001G156100 Sobic001G156100 Sobic003G045100--Sobic001G156100 Sobic004G330900 Sobic004G330900 Sobic003G045100--Sobic004G330900 Sobic006G214500 Sobic006G214500 Sobic001G443900--Sobic006G214500 Sobic001G443900--Sobic009G121100 Sobic001G443900--Sobic003G005800 Sobic001G373200 Sobic001G373200 Sobic001G443900--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G447500 Sobic001G447500 Sobic001G443900--Sobic001G447500 Sobic001G443900--Sobic001G156100 Sobic009G229800 Sobic009G229800 Sobic001G443900--Sobic009G229800 Sobic001G023200 Sobic001G023200 Sobic003G009100--Sobic001G023200 Sobic003G354400 Sobic003G354400 Sobic003G009100--Sobic003G354400 Sobic005G150800 Sobic005G150800 Sobic003G009100--Sobic005G150800 Sobic002G113300 Sobic002G113300 Sobic003G009100--Sobic002G113300 Sobic002G132000 Sobic002G132000 Sobic003G009100--Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic003G009100--Sobic004G006200 Sobic009G054700 Sobic009G054700 Sobic003G009100--Sobic009G054700 Sobic004G203100 Sobic004G203100 Sobic003G009100--Sobic004G203100 Sobic006G192700 Sobic006G192700 Sobic003G009100--Sobic006G192700 Sobic010G264400 Sobic010G264400 Sobic010G145900--Sobic010G264400 Sobic003G305400 Sobic003G305400 Sobic010G145900--Sobic003G305400 Sobic006G209500 Sobic006G209500 Sobic010G145900--Sobic006G209500 Sobic004G263900 Sobic004G263900 Sobic010G145900--Sobic004G263900 Sobic001G372000 Sobic001G372000 Sobic010G145900--Sobic001G372000 Sobic003G185200 Sobic003G185200 Sobic010G145900--Sobic003G185200 Sobic001G478300 Sobic001G478300 Sobic010G145900--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic010G145900--Sobic010G260500 Sobic004G350100 Sobic004G350100 Sobic010G145900--Sobic004G350100 Sobic002G188500 Sobic002G188500 Sobic003G005800--Sobic002G188500 Sobic003G005800--Sobic001G443900 Sobic009G235900 Sobic009G235900 Sobic003G005800--Sobic009G235900 Sobic008G160700 Sobic008G160700 Sobic003G005800--Sobic008G160700 Sobic004G037900 Sobic004G037900 Sobic003G005800--Sobic004G037900 Sobic003G005800--Sobic006G138400 Sobic001G194900 Sobic001G194900 Sobic003G005800--Sobic001G194900 Sobic003G005800--Sobic009G121100 Sobic003G005800--Sobic006G214500 Sobic008G021800 Sobic008G021800 Sobic003G241000--Sobic008G021800 Sobic003G241000--Sobic002G113300 Sobic003G241000--Sobic001G447500 Sobic006G127100 Sobic006G127100 Sobic003G241000--Sobic006G127100 Sobic004G297400 Sobic004G297400 Sobic003G241000--Sobic004G297400 Sobic003G241000--Sobic001G156100 Sobic003G061400 Sobic003G061400 Sobic003G241000--Sobic003G061400 Sobic001G408200 Sobic001G408200 Sobic003G241000--Sobic001G408200 Sobic003G061800 Sobic003G061800 Sobic003G241000--Sobic003G061800 Sobic009G121100--Sobic006G214500 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic009G121100--Sobic001G156100 Sobic009G121100--Sobic001G443900 Sobic009G121100--Sobic001G373200 Sobic010G078100 Sobic010G078100 Sobic009G121100--Sobic010G078100 Sobic004G295800 Sobic004G295800 Sobic009G121100--Sobic004G295800 Sobic002G303000 Sobic002G303000 Sobic009G121100--Sobic002G303000 Sobic010G261600 Sobic010G261600 Sobic007G205900--Sobic010G261600 Sobic004G236200 Sobic004G236200 Sobic007G205900--Sobic004G236200 Sobic003G270600 Sobic003G270600 Sobic007G205900--Sobic003G270600 Sobic003G195500 Sobic003G195500 Sobic007G205900--Sobic003G195500 Sobic004G228800 Sobic004G228800 Sobic007G205900--Sobic004G228800 Sobic004G002400 Sobic004G002400 Sobic007G205900--Sobic004G002400 Sobic005G059600 Sobic005G059600 Sobic007G205900--Sobic005G059600 Sobic006G271200 Sobic006G271200 Sobic007G205900--Sobic006G271200 Sobic006G034000 Sobic006G034000 Sobic007G205900--Sobic006G034000 Sobic001G156100--Sobic009G121100 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic001G156100--Sobic009G229800 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic003G145900 Sobic003G145900 Sobic004G330900--Sobic003G145900 Sobic004G330900--Sobic009G121100 Sobic004G282400 Sobic004G282400 Sobic004G330900--Sobic004G282400 Sobic001G221100 Sobic001G221100 Sobic004G330900--Sobic001G221100 Sobic007G202600 Sobic007G202600 Sobic004G330900--Sobic007G202600 Sobic004G330900--Sobic002G303000 Sobic004G330900--Sobic009G229800 Sobic006G058600 Sobic006G058600 Sobic004G330900--Sobic006G058600 Sobic004G330900--Sobic001G443900
Octagon: transcription factors


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