Gene annotation
Transcriptome id Sobic.007G002200.7,Sobic.007G002200.5,Sobic.007G002200.1,Sobic.007G002200.4,Sobic.007G002200.6,Sobic.007G002200.3,Sobic.007G002200.2
Synonym Sb07g000400, ATRZ-1A
Functional annotation glycine-rich RNA-binding protein 7, putative, expressed
UniProt A0A1B6PEQ0
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology K12885; RBMX, heterogeneous nuclear ribonucleoprotein G
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G26420 : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
RAP-DB (Rice) LOC_Os03g61990.2,LOC_Os03g61990.1,LOC_Os03g61990.3,LOC_Os03g61990.5,LOC_Os03g61990.4 : glycine-rich RNA-binding protein 7, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS7B02G227500 , TraesCS7B02G227500 , TraesCS7A02G326800 , TraesCS7D02G323600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G002200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
2 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.007G154701 - -
4 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
5 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
6 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
7 Sobic.009G237600 transcription factor, putative, expressed K09060: plant G-box-binding factor
8 Sobic.009G030100 expressed protein -
9 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
10 Sobic.008G128600 miro, putative, expressed K07953: GTP-binding protein SAR1
11 Sobic.002G258100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
12 Sobic.003G305400 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
13 Sobic.003G127400 BSD domain-containing protein, putative, expressed -
14 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
15 Sobic.004G349800 expressed protein -
16 Sobic.008G107500 WRKY96, expressed -
17 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
18 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
19 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
20 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic007G002200 Sobic007G002200 Sobic009G054700 Sobic009G054700 Sobic007G002200--Sobic009G054700 Sobic004G320000 Sobic004G320000 Sobic007G002200--Sobic004G320000 Sobic007G154701 Sobic007G154701 Sobic007G002200--Sobic007G154701 Sobic001G031200 Sobic001G031200 Sobic007G002200--Sobic001G031200 Sobic004G297400 Sobic004G297400 Sobic007G002200--Sobic004G297400 Sobic004G034400 Sobic004G034400 Sobic007G002200--Sobic004G034400 Sobic009G237600 Sobic009G237600 Sobic007G002200--Sobic009G237600 Sobic009G030100 Sobic009G030100 Sobic007G002200--Sobic009G030100 Sobic001G149700 Sobic001G149700 Sobic007G002200--Sobic001G149700 Sobic009G054700--Sobic001G031200 Sobic002G132300 Sobic002G132300 Sobic009G054700--Sobic002G132300 Sobic010G168600 Sobic010G168600 Sobic009G054700--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic009G054700--Sobic002G256300 Sobic002G202400 Sobic002G202400 Sobic009G054700--Sobic002G202400 Sobic009G054700--Sobic004G034400 Sobic010G067700 Sobic010G067700 Sobic009G054700--Sobic010G067700 Sobic008G128600 Sobic008G128600 Sobic009G054700--Sobic008G128600 Sobic004G104900 Sobic004G104900 Sobic009G054700--Sobic004G104900 Sobic008G174300 Sobic008G174300 Sobic004G320000--Sobic008G174300 Sobic004G349800 Sobic004G349800 Sobic004G320000--Sobic004G349800 Sobic001G512900 Sobic001G512900 Sobic004G320000--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic004G320000--Sobic001G478300 Sobic010G260500 Sobic010G260500 Sobic004G320000--Sobic010G260500 Sobic001G124300 Sobic001G124300 Sobic004G320000--Sobic001G124300 Sobic009G027000 Sobic009G027000 Sobic004G320000--Sobic009G027000 Sobic004G203100 Sobic004G203100 Sobic004G320000--Sobic004G203100 Sobic003G333600 Sobic003G333600 Sobic004G320000--Sobic003G333600 Sobic004G325900 Sobic004G325900 Sobic007G154701--Sobic004G325900 Sobic009G022000 Sobic009G022000 Sobic007G154701--Sobic009G022000 Sobic007G154701--Sobic007G002200 Sobic001G225100 Sobic001G225100 Sobic007G154701--Sobic001G225100 Sobic008G094700 Sobic008G094700 Sobic007G154701--Sobic008G094700 Sobic004G153600 Sobic004G153600 Sobic007G154701--Sobic004G153600 Sobic001G076000 Sobic001G076000 Sobic007G154701--Sobic001G076000 Sobic001G247400 Sobic001G247400 Sobic007G154701--Sobic001G247400 Sobic009G183500 Sobic009G183500 Sobic007G154701--Sobic009G183500 Sobic001G031200--Sobic009G054700 Sobic009G028800 Sobic009G028800 Sobic001G031200--Sobic009G028800 Sobic003G000800 Sobic003G000800 Sobic001G031200--Sobic003G000800 Sobic001G031200--Sobic001G149700 Sobic001G371300 Sobic001G371300 Sobic001G031200--Sobic001G371300 Sobic001G031200--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic001G031200--Sobic010G083700 Sobic004G006300 Sobic004G006300 Sobic001G031200--Sobic004G006300 Sobic003G250500 Sobic003G250500 Sobic001G031200--Sobic003G250500 Sobic004G297400--Sobic009G027000 Sobic001G028700 Sobic001G028700 Sobic004G297400--Sobic001G028700 Sobic006G122400 Sobic006G122400 Sobic004G297400--Sobic006G122400 Sobic010G078100 Sobic010G078100 Sobic004G297400--Sobic010G078100 Sobic010G042900 Sobic010G042900 Sobic004G297400--Sobic010G042900 Sobic008G160700 Sobic008G160700 Sobic004G297400--Sobic008G160700 Sobic001G111366 Sobic001G111366 Sobic004G297400--Sobic001G111366 Sobic004G297400--Sobic007G002200 Sobic001G111500 Sobic001G111500 Sobic004G297400--Sobic001G111500 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic004G034400--Sobic001G478300 Sobic004G034400--Sobic002G132300 Sobic004G034400--Sobic004G320000 Sobic009G237600--Sobic001G478300 Sobic009G237600--Sobic001G076000 Sobic001G427800 Sobic001G427800 Sobic009G237600--Sobic001G427800 Sobic010G228600 Sobic010G228600 Sobic009G237600--Sobic010G228600 Sobic009G011700 Sobic009G011700 Sobic009G237600--Sobic009G011700 Sobic009G157900 Sobic009G157900 Sobic009G237600--Sobic009G157900 Sobic009G237600--Sobic001G149700 Sobic009G237600--Sobic007G002200 Sobic010G071200 Sobic010G071200 Sobic009G237600--Sobic010G071200 Sobic006G269200 Sobic006G269200 Sobic009G030100--Sobic006G269200 Sobic003G293900 Sobic003G293900 Sobic009G030100--Sobic003G293900 Sobic004G157300 Sobic004G157300 Sobic009G030100--Sobic004G157300 Sobic009G166801 Sobic009G166801 Sobic009G030100--Sobic009G166801 Sobic003G418000 Sobic003G418000 Sobic009G030100--Sobic003G418000 Sobic009G030100--Sobic007G002200 Sobic010G110700 Sobic010G110700 Sobic009G030100--Sobic010G110700 Sobic002G338300 Sobic002G338300 Sobic009G030100--Sobic002G338300 Sobic009G064000 Sobic009G064000 Sobic009G030100--Sobic009G064000 Sobic001G149700--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G149700--Sobic010G055500 Sobic004G231400 Sobic004G231400 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic003G273100 Sobic003G273100 Sobic001G149700--Sobic003G273100 Sobic001G149700--Sobic001G076000 Sobic001G149700--Sobic001G512900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.