Gene annotation
Transcriptome id Sobic.009G193300.1
Synonym Sb09g025190
Functional annotation expressed protein
UniProt C5Z0U7
Pfam -
Panther DB PTHR21551:SF5 PTHR21551
NCBI CDD -
KEGG Orthology K12617; PATL1, DNA topoisomerase 2-associated protein PAT1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22270 : Topoisomerase II-associated protein PAT1
RAP-DB (Rice) LOC_Os01g56300.1 : expressed protein
MaizeGDB (Corn) Zm00025a044198 , Zm00025a027408
Brachypodium KQK05473 , KQK05471 , KQK09943 , PNT70941
Barley HORVU1Hr1G077510.5 , HORVU1Hr1G077510.13 , HORVU1Hr1G077510.17 , HORVU1Hr1G077510.16 , HORVU1Hr1G077510.14 , HORVU1Hr1G077510.15
Wheat TraesCS3A02G298300 , TraesCS3D02G303700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G202600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio domain-containing protein PPD1, putative, expressed K17943: pumilio RNA-binding family
2 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
3 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
4 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
5 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
6 Sobic.001G408200 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@CAMK_KIN1/SNF1/Nim1_like_AMPKh.4 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
7 Sobic.005G143400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
8 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
9 Sobic.006G252700 protein kinase domain containing protein, expressed -
10 Sobic.001G474700 expressed protein -
11 Sobic.001G279100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CW7, putative, expressed -
12 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
13 Sobic.010G091000 glutaredoxin domain containing protein, putative, expressed -
14 Sobic.002G202400 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
15 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
16 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
17 Sobic.003G195500 SEY1, putative, expressed -
18 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
19 Sobic.001G106100 expressed protein -
20 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1


Gene co-expression network
sample Sobic009G193300 Sobic009G193300 Sobic007G202600 Sobic007G202600 Sobic009G193300--Sobic007G202600 Sobic007G041500 Sobic007G041500 Sobic009G193300--Sobic007G041500 Sobic003G355000 Sobic003G355000 Sobic009G193300--Sobic003G355000 Sobic007G119200 Sobic007G119200 Sobic009G193300--Sobic007G119200 Sobic003G005200 Sobic003G005200 Sobic009G193300--Sobic003G005200 Sobic001G408200 Sobic001G408200 Sobic009G193300--Sobic001G408200 Sobic005G143400 Sobic005G143400 Sobic009G193300--Sobic005G143400 Sobic001G517500 Sobic001G517500 Sobic009G193300--Sobic001G517500 Sobic006G252700 Sobic006G252700 Sobic009G193300--Sobic006G252700 Sobic010G083000 Sobic010G083000 Sobic007G202600--Sobic010G083000 Sobic007G202600--Sobic007G041500 Sobic002G189400 Sobic002G189400 Sobic007G202600--Sobic002G189400 Sobic004G330900 Sobic004G330900 Sobic007G202600--Sobic004G330900 Sobic004G282400 Sobic004G282400 Sobic007G202600--Sobic004G282400 Sobic010G188400 Sobic010G188400 Sobic007G202600--Sobic010G188400 Sobic002G152200 Sobic002G152200 Sobic007G202600--Sobic002G152200 Sobic007G202600--Sobic009G193300 Sobic006G114500 Sobic006G114500 Sobic007G202600--Sobic006G114500 Sobic007G041500--Sobic007G119200 Sobic009G148300 Sobic009G148300 Sobic007G041500--Sobic009G148300 Sobic010G034000 Sobic010G034000 Sobic007G041500--Sobic010G034000 Sobic008G153000 Sobic008G153000 Sobic007G041500--Sobic008G153000 Sobic001G091400 Sobic001G091400 Sobic007G041500--Sobic001G091400 Sobic004G246100 Sobic004G246100 Sobic007G041500--Sobic004G246100 Sobic004G072100 Sobic004G072100 Sobic007G041500--Sobic004G072100 Sobic010G116600 Sobic010G116600 Sobic007G041500--Sobic010G116600 Sobic002G071500 Sobic002G071500 Sobic007G041500--Sobic002G071500 Sobic009G198100 Sobic009G198100 Sobic003G355000--Sobic009G198100 Sobic002G034600 Sobic002G034600 Sobic003G355000--Sobic002G034600 Sobic002G045400 Sobic002G045400 Sobic003G355000--Sobic002G045400 Sobic003G433500 Sobic003G433500 Sobic003G355000--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic003G355000--Sobic008G174300 Sobic003G355000--Sobic001G517500 Sobic007G118200 Sobic007G118200 Sobic003G355000--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic007G119200--Sobic002G034600 Sobic004G146500 Sobic004G146500 Sobic007G119200--Sobic004G146500 Sobic007G119200--Sobic008G153000 Sobic001G109800 Sobic001G109800 Sobic007G119200--Sobic001G109800 Sobic007G119200--Sobic007G041500 Sobic010G069100 Sobic010G069100 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic002G264200 Sobic002G264200 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic009G160600 Sobic009G160600 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G038600 Sobic003G038600 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic009G058500 Sobic009G058500 Sobic003G005200--Sobic009G058500 Sobic003G303300 Sobic003G303300 Sobic001G408200--Sobic003G303300 Sobic005G079900 Sobic005G079900 Sobic001G408200--Sobic005G079900 Sobic001G474700 Sobic001G474700 Sobic001G408200--Sobic001G474700 Sobic001G397400 Sobic001G397400 Sobic001G408200--Sobic001G397400 Sobic001G156100 Sobic001G156100 Sobic001G408200--Sobic001G156100 Sobic003G005600 Sobic003G005600 Sobic001G408200--Sobic003G005600 Sobic004G101900 Sobic004G101900 Sobic001G408200--Sobic004G101900 Sobic001G224600 Sobic001G224600 Sobic001G408200--Sobic001G224600 Sobic002G304000 Sobic002G304000 Sobic001G408200--Sobic002G304000 Sobic009G056800 Sobic009G056800 Sobic005G143400--Sobic009G056800 Sobic005G143400--Sobic007G118200 Sobic001G466700 Sobic001G466700 Sobic005G143400--Sobic001G466700 Sobic005G143400--Sobic008G174300 Sobic002G388200 Sobic002G388200 Sobic005G143400--Sobic002G388200 Sobic004G350100 Sobic004G350100 Sobic005G143400--Sobic004G350100 Sobic005G143400--Sobic007G119200 Sobic010G040800 Sobic010G040800 Sobic005G143400--Sobic010G040800 Sobic003G081000 Sobic003G081000 Sobic005G143400--Sobic003G081000 Sobic001G517500--Sobic003G355000 Sobic001G517500--Sobic007G119200 Sobic007G046200 Sobic007G046200 Sobic001G517500--Sobic007G046200 Sobic003G397800 Sobic003G397800 Sobic001G517500--Sobic003G397800 Sobic003G073000 Sobic003G073000 Sobic001G517500--Sobic003G073000 Sobic001G517500--Sobic002G034600 Sobic002G353600 Sobic002G353600 Sobic001G517500--Sobic002G353600 Sobic001G517500--Sobic004G146500 Sobic001G408700 Sobic001G408700 Sobic001G517500--Sobic001G408700 Sobic006G252700--Sobic003G081000 Sobic006G252700--Sobic001G466700 Sobic006G252700--Sobic004G350100 Sobic001G143500 Sobic001G143500 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic006G252700--Sobic002G034600
Octagon: transcription factors


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