Gene annotation
Transcriptome id Sobic.001G221100.1,Sobic.001G221100.2
Synonym UBQ10, Sb01g019440
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5WYH3 , A0A1B6QK90
Pfam PF00240
Panther DB PTHR10666 PTHR10666:SF146
NCBI CDD KOG0005; Ubiquitin-like protein KOG0001Ubiquitin and ubiquitin-like proteins
KEGG Orthology K08770; ubiquitin C
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G05320 : polyubiquitin 10
RAP-DB (Rice) LOC_Os10g33620.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006622
Brachypodium -
Barley HORVU3Hr1G072080.1 , HORVU3Hr1G072080.2 , HORVU1Hr1G040800.2 , HORVU1Hr1G040800.1 , HORVU1Hr1G040800.4 , HORVU3Hr1G072080.3
Wheat TraesCS1B02G171700 , TraesCS1D02G151600
Populus -


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cDNA sequences
Sobic.001G221100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
2 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
3 Sobic.010G042900 expressed protein -
4 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
5 Sobic.004G027100 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
6 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
7 Sobic.004G330900 Positive cytokinine regulator(PubMedID : 30367619)@two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
8 Sobic.005G014950 - -
9 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
10 Sobic.010G264400 CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
11 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
12 Sobic.004G088400 GTPase-activating protein, putative, expressed -
13 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
14 Sobic.004G007300 expressed protein -
15 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
16 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
17 Sobic.004G270000 coatomer subunit delta, putative, expressed -
18 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
19 Sobic.003G336800 expressed protein -
20 Sobic.003G093600 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G221100 Sobic001G221100 Sobic001G039700 Sobic001G039700 Sobic001G221100--Sobic001G039700 Sobic009G032300 Sobic009G032300 Sobic001G221100--Sobic009G032300 Sobic010G042900 Sobic010G042900 Sobic001G221100--Sobic010G042900 Sobic003G145900 Sobic003G145900 Sobic001G221100--Sobic003G145900 Sobic004G027100 Sobic004G027100 Sobic001G221100--Sobic004G027100 Sobic004G034400 Sobic004G034400 Sobic001G221100--Sobic004G034400 Sobic004G330900 Sobic004G330900 Sobic001G221100--Sobic004G330900 Sobic005G014950 Sobic005G014950 Sobic001G221100--Sobic005G014950 Sobic002G197100 Sobic002G197100 Sobic001G221100--Sobic002G197100 Sobic008G034600 Sobic008G034600 Sobic001G039700--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic001G039700--Sobic004G271900 Sobic001G056200 Sobic001G056200 Sobic001G039700--Sobic001G056200 Sobic003G440700 Sobic003G440700 Sobic001G039700--Sobic003G440700 Sobic009G022200 Sobic009G022200 Sobic001G039700--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G039700--Sobic001G221100 Sobic003G359300 Sobic003G359300 Sobic001G039700--Sobic003G359300 Sobic010G264400 Sobic010G264400 Sobic009G032300--Sobic010G264400 Sobic006G130200 Sobic006G130200 Sobic009G032300--Sobic006G130200 Sobic006G092800 Sobic006G092800 Sobic009G032300--Sobic006G092800 Sobic010G174800 Sobic010G174800 Sobic009G032300--Sobic010G174800 Sobic006G128800 Sobic006G128800 Sobic009G032300--Sobic006G128800 Sobic009G032300--Sobic002G197100 Sobic007G115900 Sobic007G115900 Sobic009G032300--Sobic007G115900 Sobic009G032300--Sobic001G221100 Sobic007G191100 Sobic007G191100 Sobic009G032300--Sobic007G191100 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic001G347600 Sobic001G347600 Sobic010G042900--Sobic001G347600 Sobic005G007800 Sobic005G007800 Sobic010G042900--Sobic005G007800 Sobic010G042900--Sobic004G034400 Sobic001G028700 Sobic001G028700 Sobic010G042900--Sobic001G028700 Sobic009G235900 Sobic009G235900 Sobic010G042900--Sobic009G235900 Sobic009G117400 Sobic009G117400 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic003G145900--Sobic009G235900 Sobic008G160700 Sobic008G160700 Sobic003G145900--Sobic008G160700 Sobic003G145900--Sobic005G007800 Sobic003G145900--Sobic004G330900 Sobic003G145900--Sobic001G221100 Sobic003G145900--Sobic010G042900 Sobic002G303000 Sobic002G303000 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic004G027100--Sobic004G061900 Sobic004G088400 Sobic004G088400 Sobic004G027100--Sobic004G088400 Sobic010G260500 Sobic010G260500 Sobic004G027100--Sobic010G260500 Sobic001G235000 Sobic001G235000 Sobic004G027100--Sobic001G235000 Sobic002G157300 Sobic002G157300 Sobic004G027100--Sobic002G157300 Sobic002G177400 Sobic002G177400 Sobic004G027100--Sobic002G177400 Sobic007G008800 Sobic007G008800 Sobic004G027100--Sobic007G008800 Sobic009G040700 Sobic009G040700 Sobic004G027100--Sobic009G040700 Sobic008G117200 Sobic008G117200 Sobic004G027100--Sobic008G117200 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic009G054700 Sobic009G054700 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic002G132300 Sobic002G132300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic004G330900--Sobic003G145900 Sobic009G121100 Sobic009G121100 Sobic004G330900--Sobic009G121100 Sobic004G282400 Sobic004G282400 Sobic004G330900--Sobic004G282400 Sobic004G330900--Sobic001G221100 Sobic007G202600 Sobic007G202600 Sobic004G330900--Sobic007G202600 Sobic004G330900--Sobic002G303000 Sobic009G229800 Sobic009G229800 Sobic004G330900--Sobic009G229800 Sobic006G058600 Sobic006G058600 Sobic004G330900--Sobic006G058600 Sobic001G443900 Sobic001G443900 Sobic004G330900--Sobic001G443900 Sobic001G043900 Sobic001G043900 Sobic005G014950--Sobic001G043900 Sobic005G014950--Sobic001G221100 Sobic001G428400 Sobic001G428400 Sobic005G014950--Sobic001G428400 Sobic005G014950--Sobic010G042900 Sobic003G079750 Sobic003G079750 Sobic005G014950--Sobic003G079750 Sobic008G126200 Sobic008G126200 Sobic005G014950--Sobic008G126200 Sobic005G014950--Sobic001G039700 Sobic005G014950--Sobic004G034400 Sobic005G014950--Sobic007G115900 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic006G173100 Sobic006G173100 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900
Octagon: transcription factors


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