Gene annotation
Transcriptome id Sobic.004G270000.3
Synonym Sb04g030780
Functional annotation coatomer subunit delta, putative, expressed
UniProt C5Y0D8
Pfam PF00928
Panther DB PTHR10121 PTHR10121:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05010 : clathrin adaptor complexes medium subunit family protein
RAP-DB (Rice) LOC_Os01g61710.2 : coatomer subunit delta, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ98012 , KQK10441 , KQK10442
Barley HORVU3Hr1G087490.13 , HORVU3Hr1G087490.12 , HORVU3Hr1G087490.11 , HORVU3Hr1G087490.10 , HORVU3Hr1G087490.9 , HORVU3Hr1G087490.8 , HORVU1Hr1G062650.10 , HORVU3Hr1G087490.1 , HORVU1Hr1G062650.13 , HORVU3Hr1G087490.7 , HORVU1Hr1G062650.15 , HORVU3Hr1G087490.4 , HORVU1Hr1G062650.12 , HORVU1Hr1G062650.8 , HORVU1Hr1G062650.9 , HORVU1Hr1G062650.2 , HORVU1Hr1G062650.3 , HORVU1Hr1G062650.1 , HORVU1Hr1G062650.6 , HORVU1Hr1G062650.7 , HORVU1Hr1G062650.4 , HORVU1Hr1G062650.5 , HORVU1Hr1G062650.11 , HORVU1Hr1G062650.14 , HORVU3Hr1G087490.6
Wheat TraesCS3A02G352400 , TraesCS3A02G352400 , TraesCS1B02G257500 , TraesCS1B02G257500 , TraesCS3D02G346400 , TraesCS3D02G346400 , TraesCS1D02G246200 , TraesCS1D02G246200 , TraesCS1D02G246200 , TraesCS1A02G246900
Populus -


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cDNA sequences
Sobic.004G270000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
3 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
4 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
5 Sobic.009G135800 CUE domain containing protein, expressed -
6 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
7 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
8 Sobic.003G176400 - -
9 Sobic.005G013000 OsFBX181 - F-box domain containing protein, expressed -
10 Sobic.008G042600 N-acetylglucosaminyltransferase I, putative, expressed K00726: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
11 Sobic.004G031700 expressed protein -
12 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
13 Sobic.008G024600 expressed protein -
14 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
15 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
16 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
17 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
18 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
19 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
20 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4


Gene co-expression network
sample Sobic004G270000 Sobic004G270000 Sobic002G158700 Sobic002G158700 Sobic004G270000--Sobic002G158700 Sobic002G197100 Sobic002G197100 Sobic004G270000--Sobic002G197100 Sobic003G008500 Sobic003G008500 Sobic004G270000--Sobic003G008500 Sobic010G276800 Sobic010G276800 Sobic004G270000--Sobic010G276800 Sobic009G135800 Sobic009G135800 Sobic004G270000--Sobic009G135800 Sobic006G173100 Sobic006G173100 Sobic004G270000--Sobic006G173100 Sobic001G464200 Sobic001G464200 Sobic004G270000--Sobic001G464200 Sobic003G176400 Sobic003G176400 Sobic004G270000--Sobic003G176400 Sobic005G013000 Sobic005G013000 Sobic004G270000--Sobic005G013000 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic002G157300 Sobic002G157300 Sobic003G008500--Sobic002G157300 Sobic006G082900 Sobic006G082900 Sobic003G008500--Sobic006G082900 Sobic003G008500--Sobic002G370900 Sobic004G067700 Sobic004G067700 Sobic003G008500--Sobic004G067700 Sobic003G008500--Sobic003G401000 Sobic003G008500--Sobic001G514000 Sobic003G008500--Sobic006G173100 Sobic006G202200 Sobic006G202200 Sobic003G008500--Sobic006G202200 Sobic006G128800 Sobic006G128800 Sobic003G008500--Sobic006G128800 Sobic006G124900 Sobic006G124900 Sobic010G276800--Sobic006G124900 Sobic008G024600 Sobic008G024600 Sobic010G276800--Sobic008G024600 Sobic010G001600 Sobic010G001600 Sobic010G276800--Sobic010G001600 Sobic008G042600 Sobic008G042600 Sobic010G276800--Sobic008G042600 Sobic001G543800 Sobic001G543800 Sobic010G276800--Sobic001G543800 Sobic009G040700 Sobic009G040700 Sobic010G276800--Sobic009G040700 Sobic010G276800--Sobic003G008500 Sobic004G256600 Sobic004G256600 Sobic010G276800--Sobic004G256600 Sobic005G177800 Sobic005G177800 Sobic010G276800--Sobic005G177800 Sobic009G135800--Sobic004G031700 Sobic002G340100 Sobic002G340100 Sobic009G135800--Sobic002G340100 Sobic009G135800--Sobic008G024600 Sobic006G128900 Sobic006G128900 Sobic009G135800--Sobic006G128900 Sobic002G053000 Sobic002G053000 Sobic009G135800--Sobic002G053000 Sobic009G135800--Sobic003G445400 Sobic009G135800--Sobic002G158700 Sobic009G135800--Sobic006G173100 Sobic009G000500 Sobic009G000500 Sobic009G135800--Sobic009G000500 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic006G173100--Sobic004G067700 Sobic006G173100--Sobic002G370900 Sobic001G464200--Sobic002G158700 Sobic001G544200 Sobic001G544200 Sobic001G464200--Sobic001G544200 Sobic001G464200--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic001G464200--Sobic001G477800 Sobic001G464200--Sobic006G128900 Sobic002G144966 Sobic002G144966 Sobic001G464200--Sobic002G144966 Sobic001G511500 Sobic001G511500 Sobic001G464200--Sobic001G511500 Sobic010G263800 Sobic010G263800 Sobic001G464200--Sobic010G263800 Sobic001G464200--Sobic003G445400 Sobic006G060100 Sobic006G060100 Sobic003G176400--Sobic006G060100 Sobic001G094000 Sobic001G094000 Sobic003G176400--Sobic001G094000 Sobic003G176400--Sobic002G157300 Sobic003G176400--Sobic009G040700 Sobic006G080300 Sobic006G080300 Sobic003G176400--Sobic006G080300 Sobic007G079200 Sobic007G079200 Sobic003G176400--Sobic007G079200 Sobic008G084700 Sobic008G084700 Sobic003G176400--Sobic008G084700 Sobic003G268300 Sobic003G268300 Sobic003G176400--Sobic003G268300 Sobic007G178700 Sobic007G178700 Sobic003G176400--Sobic007G178700 Sobic005G013000--Sobic002G158700 Sobic005G013000--Sobic006G128900 Sobic005G013000--Sobic008G024600 Sobic005G013000--Sobic009G040700 Sobic005G013000--Sobic001G544200 Sobic005G013000--Sobic001G464200 Sobic001G111900 Sobic001G111900 Sobic005G013000--Sobic001G111900 Sobic008G078100 Sobic008G078100 Sobic005G013000--Sobic008G078100 Sobic005G013000--Sobic003G445400
Octagon: transcription factors


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