Gene annotation
Transcriptome id Sobic.005G013000.1
Synonym Sb05g001110
Functional annotation OsFBX181 - F-box domain containing protein, expressed
UniProt C5Y3G5
Pfam -
Panther DB PTHR33800 PTHR33800:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g02100.1 : OsFBX181 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045261
Brachypodium PNT76603 , KQK19761
Barley HORVU7Hr1G006250.8 , HORVU7Hr1G006250.9 , HORVU7Hr1G006250.6 , HORVU7Hr1G006250.7 , HORVU7Hr1G006250.4 , HORVU7Hr1G006250.5 , HORVU7Hr1G006250.1 , HORVU2Hr1G116490.2 , HORVU2Hr1G116490.1 , HORVU7Hr1G006250.2 , HORVU7Hr1G006250.3 , HORVU7Hr1G006250.10 , HORVU7Hr1G006250.11 , HORVU7Hr1G006250.12 , HORVU7Hr1G006250.13 , HORVU1Hr1G040130.2 , HORVU1Hr1G040130.1
Wheat TraesCS7D02G430100 , TraesCS4A02G453500 , TraesCS2B02G164900 , TraesCS2B02G164900 , TraesCS5D02G526000 , TraesCS5D02G526400 , TraesCS7A02G035400 , TraesCS4A02G346200 , TraesCS2D02G144100 , TraesCS2B02G164700 , TraesCS7A02G064900 , TraesCS4A02G346500 , TraesCS4A02G346500 , TraesCS4A02G346500 , TraesCS4A02G346500 , TraesCS5B02G526900 , TraesCS5B02G526900 , TraesCS5B02G526700 , TraesCS2B02G165300 , TraesCS5D02G525900 , TraesCS5D02G525900 , TraesCS7D02G031900 , TraesCS7D02G059500 , TraesCS2D02G143600 , TraesCS5B02G526800 , TraesCS5B02G526800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
3 Sobic.008G024600 expressed protein -
4 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
5 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
6 Sobic.001G464200 flap endonuclease, putative, expressed K10846: ERCC5, XPG, DNA excision repair protein ERCC-5
7 Sobic.001G111900 - -
8 Sobic.008G078100 EDM2, putative, expressed -
9 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
10 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
11 Sobic.003G113200 5-nucleotidase domain-containing protein, putative, expressed -
12 Sobic.004G031700 expressed protein -
13 Sobic.003G008500 VHS and GAT domain containing protein, expressed -
14 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
15 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
16 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
17 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
19 Sobic.009G135800 CUE domain containing protein, expressed -
20 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic005G013000 Sobic005G013000 Sobic002G158700 Sobic002G158700 Sobic005G013000--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic005G013000--Sobic006G128900 Sobic008G024600 Sobic008G024600 Sobic005G013000--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic005G013000--Sobic009G040700 Sobic001G544200 Sobic001G544200 Sobic005G013000--Sobic001G544200 Sobic001G464200 Sobic001G464200 Sobic005G013000--Sobic001G464200 Sobic001G111900 Sobic001G111900 Sobic005G013000--Sobic001G111900 Sobic008G078100 Sobic008G078100 Sobic005G013000--Sobic008G078100 Sobic003G445400 Sobic003G445400 Sobic005G013000--Sobic003G445400 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic001G511500 Sobic001G511500 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G128900--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic008G024600--Sobic006G209850 Sobic002G053000 Sobic002G053000 Sobic008G024600--Sobic002G053000 Sobic008G024600--Sobic006G128900 Sobic008G024600--Sobic009G040700 Sobic010G129200 Sobic010G129200 Sobic008G024600--Sobic010G129200 Sobic008G024600--Sobic002G158700 Sobic002G343800 Sobic002G343800 Sobic008G024600--Sobic002G343800 Sobic003G280800 Sobic003G280800 Sobic008G024600--Sobic003G280800 Sobic005G045300 Sobic005G045300 Sobic008G024600--Sobic005G045300 Sobic001G094000 Sobic001G094000 Sobic009G040700--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic009G040700--Sobic003G187400 Sobic005G149500 Sobic005G149500 Sobic009G040700--Sobic005G149500 Sobic007G011400 Sobic007G011400 Sobic009G040700--Sobic007G011400 Sobic002G157300 Sobic002G157300 Sobic009G040700--Sobic002G157300 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic004G196700 Sobic004G196700 Sobic009G040700--Sobic004G196700 Sobic009G040700--Sobic008G078100 Sobic001G544200--Sobic004G031700 Sobic001G544200--Sobic001G477800 Sobic001G544200--Sobic001G464200 Sobic001G544200--Sobic009G040700 Sobic001G544200--Sobic001G511500 Sobic001G544200--Sobic006G128900 Sobic001G544200--Sobic008G078100 Sobic008G054500 Sobic008G054500 Sobic001G544200--Sobic008G054500 Sobic001G544200--Sobic001G094000 Sobic001G464200--Sobic002G158700 Sobic001G464200--Sobic001G544200 Sobic001G464200--Sobic004G031700 Sobic001G464200--Sobic001G477800 Sobic001G464200--Sobic006G128900 Sobic002G144966 Sobic002G144966 Sobic001G464200--Sobic002G144966 Sobic001G464200--Sobic001G511500 Sobic010G263800 Sobic010G263800 Sobic001G464200--Sobic010G263800 Sobic001G464200--Sobic003G445400 Sobic010G056000 Sobic010G056000 Sobic001G111900--Sobic010G056000 Sobic009G161600 Sobic009G161600 Sobic001G111900--Sobic009G161600 Sobic009G127900 Sobic009G127900 Sobic001G111900--Sobic009G127900 Sobic001G454401 Sobic001G454401 Sobic001G111900--Sobic001G454401 Sobic007G178700 Sobic007G178700 Sobic001G111900--Sobic007G178700 Sobic005G077466 Sobic005G077466 Sobic001G111900--Sobic005G077466 Sobic006G262200 Sobic006G262200 Sobic001G111900--Sobic006G262200 Sobic003G084900 Sobic003G084900 Sobic001G111900--Sobic003G084900 Sobic006G009400 Sobic006G009400 Sobic001G111900--Sobic006G009400 Sobic008G078100--Sobic001G094000 Sobic008G078100--Sobic008G054500 Sobic008G078100--Sobic009G040700 Sobic008G078100--Sobic001G477800 Sobic008G078100--Sobic003G187400 Sobic008G078100--Sobic001G544200 Sobic007G185900 Sobic007G185900 Sobic008G078100--Sobic007G185900 Sobic003G422300 Sobic003G422300 Sobic008G078100--Sobic003G422300 Sobic008G078100--Sobic004G196700 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G307000 Sobic003G307000 Sobic003G445400--Sobic003G307000 Sobic003G445400--Sobic002G158700 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.