Gene annotation
Transcriptome id Sobic.005G014950.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGA7
Pfam PF00646 PF03478
Panther DB PTHR33110 PTHR33110:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G22660 : F-box family protein with a domain of unknown function (DUF295)
RAP-DB (Rice) LOC_Os01g34630.1 : retrotransposon protein, putative, Ty1-copia subclass, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
2 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
3 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
4 Sobic.010G042900 expressed protein -
5 Sobic.003G079750 - -
6 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
7 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
8 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
9 Sobic.007G115900 SAM domain family protein, expressed -
10 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
11 Sobic.009G225200 expressed protein -
12 Sobic.007G007900 mago nashi, putative, expressed K12877: protein mago nashi
13 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
14 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
16 Sobic.009G117300 protein kinase APK1B, chloroplast precursor, putative, expressed -
17 Sobic.002G376300 FYVE zinc finger family protein, expressed -
18 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
19 Sobic.006G097700 mitochondrial carrier protein, putative, expressed K15112: SLC25A27, solute carrier family 25 (mitochondrial uncoupling protein), member 27
20 Sobic.003G417900 cullin-1, putative, expressed -


Gene co-expression network
sample Sobic005G014950 Sobic005G014950 Sobic001G043900 Sobic001G043900 Sobic005G014950--Sobic001G043900 Sobic001G221100 Sobic001G221100 Sobic005G014950--Sobic001G221100 Sobic001G428400 Sobic001G428400 Sobic005G014950--Sobic001G428400 Sobic010G042900 Sobic010G042900 Sobic005G014950--Sobic010G042900 Sobic003G079750 Sobic003G079750 Sobic005G014950--Sobic003G079750 Sobic008G126200 Sobic008G126200 Sobic005G014950--Sobic008G126200 Sobic001G039700 Sobic001G039700 Sobic005G014950--Sobic001G039700 Sobic004G034400 Sobic004G034400 Sobic005G014950--Sobic004G034400 Sobic007G115900 Sobic007G115900 Sobic005G014950--Sobic007G115900 Sobic001G043900--Sobic007G115900 Sobic009G225200 Sobic009G225200 Sobic001G043900--Sobic009G225200 Sobic006G258900 Sobic006G258900 Sobic001G043900--Sobic006G258900 Sobic001G043900--Sobic005G014950 Sobic003G417900 Sobic003G417900 Sobic001G043900--Sobic003G417900 Sobic001G043900--Sobic001G428400 Sobic009G117300 Sobic009G117300 Sobic001G043900--Sobic009G117300 Sobic009G015800 Sobic009G015800 Sobic001G043900--Sobic009G015800 Sobic002G197100 Sobic002G197100 Sobic001G043900--Sobic002G197100 Sobic001G221100--Sobic001G039700 Sobic009G032300 Sobic009G032300 Sobic001G221100--Sobic009G032300 Sobic001G221100--Sobic010G042900 Sobic003G145900 Sobic003G145900 Sobic001G221100--Sobic003G145900 Sobic004G027100 Sobic004G027100 Sobic001G221100--Sobic004G027100 Sobic001G221100--Sobic004G034400 Sobic004G330900 Sobic004G330900 Sobic001G221100--Sobic004G330900 Sobic001G221100--Sobic005G014950 Sobic001G221100--Sobic002G197100 Sobic004G077000 Sobic004G077000 Sobic001G428400--Sobic004G077000 Sobic001G428400--Sobic009G117300 Sobic004G211400 Sobic004G211400 Sobic001G428400--Sobic004G211400 Sobic001G428400--Sobic001G039700 Sobic004G006300 Sobic004G006300 Sobic001G428400--Sobic004G006300 Sobic008G034600 Sobic008G034600 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic009G117400 Sobic009G117400 Sobic001G428400--Sobic009G117400 Sobic008G136000 Sobic008G136000 Sobic001G428400--Sobic008G136000 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic001G347600 Sobic001G347600 Sobic010G042900--Sobic001G347600 Sobic005G007800 Sobic005G007800 Sobic010G042900--Sobic005G007800 Sobic010G042900--Sobic004G034400 Sobic001G028700 Sobic001G028700 Sobic010G042900--Sobic001G028700 Sobic009G235900 Sobic009G235900 Sobic010G042900--Sobic009G235900 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic003G079750--Sobic005G014950 Sobic003G142700 Sobic003G142700 Sobic003G079750--Sobic003G142700 Sobic003G079750--Sobic001G428400 Sobic003G079750--Sobic001G043900 Sobic003G079750--Sobic004G077000 Sobic003G079750--Sobic009G225200 Sobic003G079750--Sobic009G032300 Sobic003G079750--Sobic008G126200 Sobic010G209700 Sobic010G209700 Sobic003G079750--Sobic010G209700 Sobic006G184300 Sobic006G184300 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic008G126200--Sobic001G347600 Sobic005G012000 Sobic005G012000 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic002G108800 Sobic002G108800 Sobic008G126200--Sobic002G108800 Sobic001G039700--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic001G039700--Sobic004G271900 Sobic001G056200 Sobic001G056200 Sobic001G039700--Sobic001G056200 Sobic003G440700 Sobic003G440700 Sobic001G039700--Sobic003G440700 Sobic009G022200 Sobic009G022200 Sobic001G039700--Sobic009G022200 Sobic002G421700 Sobic002G421700 Sobic001G039700--Sobic002G421700 Sobic004G061900 Sobic004G061900 Sobic001G039700--Sobic004G061900 Sobic001G039700--Sobic001G221100 Sobic003G359300 Sobic003G359300 Sobic001G039700--Sobic003G359300 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic009G054700 Sobic009G054700 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic002G132300 Sobic002G132300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic004G316800 Sobic004G316800 Sobic007G115900--Sobic004G316800 Sobic001G522900 Sobic001G522900 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic007G115900--Sobic001G043900 Sobic007G115900--Sobic009G032300 Sobic007G115900--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic007G115900--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic007G115900--Sobic004G007300 Sobic003G211700 Sobic003G211700 Sobic007G115900--Sobic003G211700
Octagon: transcription factors


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