Gene annotation
Transcriptome id Sobic.007G007900.1
Synonym Sb07g000840, MEE63, MAGO, HAP1
Functional annotation mago nashi, putative, expressed
UniProt C5YLJ8
Pfam PF02792
Panther DB PTHR12638
NCBI CDD KOG3392; Exon-exon junction complex, Magoh component
KEGG Orthology K12877; protein mago nashi
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G02140 : mago nashi family protein
RAP-DB (Rice) LOC_Os12g18880.1 : mago nashi, putative, expressed
MaizeGDB (Corn) Zm00025a055902 , Zm00025a040170 , Zm00025a030308
Brachypodium KQJ94796
Barley HORVU7Hr1G077420.4 , HORVU7Hr1G077420.1 , HORVU7Hr1G077420.3 , HORVU7Hr1G077420.2
Wheat TraesCS7B02G224300 , TraesCS7D02G320000 , TraesCS7A02G323400
Populus -


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cDNA sequences
Sobic.007G007900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
2 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
3 Sobic.003G142700 expressed protein -
4 Sobic.001G429400 wibg, putative, expressed K14294: WIBG, partner of Y14 and mago
5 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
6 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
7 Sobic.002G392600 zinc finger CCHC domain-containing protein 10, putative, expressed -
8 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
9 Sobic.010G000700 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
10 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
11 Sobic.003G043100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
12 Sobic.006G242300 - -
13 Sobic.001G253600 expressed protein -
14 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.005G014950 - -
16 Sobic.004G077000 expressed protein -
17 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
18 Sobic.010G012600 expressed protein -
19 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
20 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote


Gene co-expression network
sample Sobic007G007900 Sobic007G007900 Sobic001G428400 Sobic001G428400 Sobic007G007900--Sobic001G428400 Sobic003G045400 Sobic003G045400 Sobic007G007900--Sobic003G045400 Sobic003G142700 Sobic003G142700 Sobic007G007900--Sobic003G142700 Sobic001G429400 Sobic001G429400 Sobic007G007900--Sobic001G429400 Sobic010G055500 Sobic010G055500 Sobic007G007900--Sobic010G055500 Sobic006G038400 Sobic006G038400 Sobic007G007900--Sobic006G038400 Sobic002G392600 Sobic002G392600 Sobic007G007900--Sobic002G392600 Sobic001G149700 Sobic001G149700 Sobic007G007900--Sobic001G149700 Sobic010G000700 Sobic010G000700 Sobic007G007900--Sobic010G000700 Sobic004G077000 Sobic004G077000 Sobic001G428400--Sobic004G077000 Sobic009G117300 Sobic009G117300 Sobic001G428400--Sobic009G117300 Sobic004G211400 Sobic004G211400 Sobic001G428400--Sobic004G211400 Sobic001G039700 Sobic001G039700 Sobic001G428400--Sobic001G039700 Sobic004G006300 Sobic004G006300 Sobic001G428400--Sobic004G006300 Sobic008G034600 Sobic008G034600 Sobic001G428400--Sobic008G034600 Sobic003G043100 Sobic003G043100 Sobic001G428400--Sobic003G043100 Sobic009G117400 Sobic009G117400 Sobic001G428400--Sobic009G117400 Sobic008G136000 Sobic008G136000 Sobic001G428400--Sobic008G136000 Sobic001G467000 Sobic001G467000 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic010G211300 Sobic010G211300 Sobic003G045400--Sobic010G211300 Sobic008G139700 Sobic008G139700 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic009G140700 Sobic009G140700 Sobic003G045400--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic003G045400--Sobic001G143500 Sobic003G051200 Sobic003G051200 Sobic003G142700--Sobic003G051200 Sobic003G248500 Sobic003G248500 Sobic003G142700--Sobic003G248500 Sobic004G283000 Sobic004G283000 Sobic003G142700--Sobic004G283000 Sobic009G225200 Sobic009G225200 Sobic003G142700--Sobic009G225200 Sobic003G258900 Sobic003G258900 Sobic003G142700--Sobic003G258900 Sobic003G142700--Sobic003G045400 Sobic003G142700--Sobic002G313500 Sobic003G142700--Sobic007G007900 Sobic003G442000 Sobic003G442000 Sobic003G142700--Sobic003G442000 Sobic001G429400--Sobic004G072800 Sobic003G024800 Sobic003G024800 Sobic001G429400--Sobic003G024800 Sobic001G429400--Sobic010G211300 Sobic001G429400--Sobic003G045400 Sobic001G429400--Sobic003G043100 Sobic001G427800 Sobic001G427800 Sobic001G429400--Sobic001G427800 Sobic001G429400--Sobic009G140700 Sobic002G272600 Sobic002G272600 Sobic001G429400--Sobic002G272600 Sobic004G263900 Sobic004G263900 Sobic001G429400--Sobic004G263900 Sobic010G071200 Sobic010G071200 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G055500--Sobic004G231400 Sobic001G512900 Sobic001G512900 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic008G142700 Sobic008G142700 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400 Sobic006G038400--Sobic003G045400 Sobic009G232700 Sobic009G232700 Sobic006G038400--Sobic009G232700 Sobic006G038400--Sobic009G140700 Sobic006G038400--Sobic004G150400 Sobic004G305600 Sobic004G305600 Sobic006G038400--Sobic004G305600 Sobic009G114800 Sobic009G114800 Sobic006G038400--Sobic009G114800 Sobic008G062000 Sobic008G062000 Sobic006G038400--Sobic008G062000 Sobic007G079700 Sobic007G079700 Sobic006G038400--Sobic007G079700 Sobic001G512600 Sobic001G512600 Sobic006G038400--Sobic001G512600 Sobic002G392600--Sobic004G263900 Sobic003G437500 Sobic003G437500 Sobic002G392600--Sobic003G437500 Sobic005G162600 Sobic005G162600 Sobic002G392600--Sobic005G162600 Sobic003G074000 Sobic003G074000 Sobic002G392600--Sobic003G074000 Sobic002G392600--Sobic001G149700 Sobic002G392600--Sobic001G039700 Sobic006G257900 Sobic006G257900 Sobic002G392600--Sobic006G257900 Sobic002G392600--Sobic007G007900 Sobic007G063200 Sobic007G063200 Sobic002G392600--Sobic007G063200 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G478300 Sobic001G478300 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic003G273100 Sobic003G273100 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G149700--Sobic001G512900 Sobic010G269600 Sobic010G269600 Sobic010G000700--Sobic010G269600 Sobic003G185200 Sobic003G185200 Sobic010G000700--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic010G000700--Sobic002G365100 Sobic010G000700--Sobic010G055500 Sobic010G000700--Sobic004G150400 Sobic010G000700--Sobic003G248500 Sobic010G000700--Sobic008G034600 Sobic010G000700--Sobic006G109300 Sobic002G061400 Sobic002G061400 Sobic010G000700--Sobic002G061400
Octagon: transcription factors


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