Gene annotation
Transcriptome id Sobic.003G045400.1
Synonym NRPB7, Sb03g003990
Functional annotation DNA-directed RNA polymerase II subunit RPB7, putative, expressed
UniProt -
Pfam PF03876 PF00575
Panther DB PTHR12709
NCBI CDD KOG3298; DNA-directed RNA polymerase subunit E'
KEGG Orthology K03015; RPB7, DNA-directed RNA polymerase II subunit RPB7
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G59180 : DNA-directed RNA polymerase II
RAP-DB (Rice) LOC_Os05g33240.1 : DNA-directed RNA polymerase II subunit RPB7, putative, expressed
MaizeGDB (Corn) Zm00025a043627
Brachypodium KQK06355
Barley HORVU1Hr1G061810.1 , HORVU1Hr1G061810.3 , HORVU1Hr1G061810.2
Wheat TraesCS1B02G261500 , TraesCS1D02G250500 , TraesCS1A02G250900
Populus -


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cDNA sequences
Sobic.003G045400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
2 Sobic.006G242300 - -
3 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
4 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
5 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
6 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
7 Sobic.004G072800 expressed protein -
8 Sobic.009G140700 PHD finger protein, putative, expressed -
9 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
10 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
11 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
12 Sobic.003G437500 syntaxin 6, putative, expressed -
13 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
15 Sobic.001G080000 expressed protein -
16 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
17 Sobic.001G464100 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.001G291100 tetraspanin family protein, putative, expressed -
19 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
20 Sobic.006G267300 expressed protein -


Gene co-expression network
sample Sobic003G045400 Sobic003G045400 Sobic001G467000 Sobic001G467000 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic010G211300 Sobic010G211300 Sobic003G045400--Sobic010G211300 Sobic008G139700 Sobic008G139700 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic009G140700 Sobic009G140700 Sobic003G045400--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic003G045400--Sobic001G143500 Sobic001G372000 Sobic001G372000 Sobic001G467000--Sobic001G372000 Sobic001G467000--Sobic003G045400 Sobic004G150400 Sobic004G150400 Sobic001G467000--Sobic004G150400 Sobic001G512600 Sobic001G512600 Sobic001G467000--Sobic001G512600 Sobic001G464100 Sobic001G464100 Sobic001G467000--Sobic001G464100 Sobic001G467000--Sobic002G313500 Sobic001G028400 Sobic001G028400 Sobic001G467000--Sobic001G028400 Sobic001G467000--Sobic010G211300 Sobic001G291100 Sobic001G291100 Sobic001G467000--Sobic001G291100 Sobic001G041200 Sobic001G041200 Sobic006G242300--Sobic001G041200 Sobic006G242300--Sobic003G045400 Sobic006G056600 Sobic006G056600 Sobic006G242300--Sobic006G056600 Sobic009G133400 Sobic009G133400 Sobic006G242300--Sobic009G133400 Sobic003G119400 Sobic003G119400 Sobic006G242300--Sobic003G119400 Sobic001G067900 Sobic001G067900 Sobic006G242300--Sobic001G067900 Sobic009G033900 Sobic009G033900 Sobic006G242300--Sobic009G033900 Sobic006G242300--Sobic004G072800 Sobic003G043100 Sobic003G043100 Sobic006G242300--Sobic003G043100 Sobic010G211300--Sobic001G028400 Sobic004G013600 Sobic004G013600 Sobic010G211300--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic010G211300--Sobic006G267300 Sobic001G056200 Sobic001G056200 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G033400 Sobic010G033400 Sobic010G211300--Sobic010G033400 Sobic002G084300 Sobic002G084300 Sobic010G211300--Sobic002G084300 Sobic003G437500 Sobic003G437500 Sobic010G211300--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic010G211300--Sobic005G000800 Sobic008G139700--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic008G139700--Sobic010G017800 Sobic001G080000 Sobic001G080000 Sobic008G139700--Sobic001G080000 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic008G139700--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic008G139700--Sobic007G205000 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600 Sobic002G313500--Sobic001G143500 Sobic001G371200 Sobic001G371200 Sobic002G313500--Sobic001G371200 Sobic004G350100 Sobic004G350100 Sobic002G313500--Sobic004G350100 Sobic002G378200 Sobic002G378200 Sobic002G313500--Sobic002G378200 Sobic004G283000 Sobic004G283000 Sobic002G313500--Sobic004G283000 Sobic002G313500--Sobic008G139700 Sobic004G007300 Sobic004G007300 Sobic002G313500--Sobic004G007300 Sobic001G466700 Sobic001G466700 Sobic002G313500--Sobic001G466700 Sobic002G313500--Sobic010G017800 Sobic006G183000 Sobic006G183000 Sobic001G307900--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic001G307900--Sobic001G439600 Sobic001G307900--Sobic001G067900 Sobic003G124800 Sobic003G124800 Sobic001G307900--Sobic003G124800 Sobic001G307900--Sobic003G045400 Sobic001G489700 Sobic001G489700 Sobic001G307900--Sobic001G489700 Sobic001G105100 Sobic001G105100 Sobic001G307900--Sobic001G105100 Sobic002G129000 Sobic002G129000 Sobic001G307900--Sobic002G129000 Sobic001G263000 Sobic001G263000 Sobic001G307900--Sobic001G263000 Sobic004G072800--Sobic001G067900 Sobic003G350600 Sobic003G350600 Sobic004G072800--Sobic003G350600 Sobic003G007500 Sobic003G007500 Sobic004G072800--Sobic003G007500 Sobic004G072800--Sobic002G313500 Sobic007G118000 Sobic007G118000 Sobic004G072800--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic004G072800--Sobic001G522900 Sobic002G281300 Sobic002G281300 Sobic004G072800--Sobic002G281300 Sobic001G429400 Sobic001G429400 Sobic004G072800--Sobic001G429400 Sobic004G072800--Sobic003G045400 Sobic001G010600 Sobic001G010600 Sobic009G140700--Sobic001G010600 Sobic007G086500 Sobic007G086500 Sobic009G140700--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic009G140700--Sobic002G058300 Sobic009G140700--Sobic005G000800 Sobic009G140700--Sobic003G045400 Sobic009G140700--Sobic008G139700 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic001G309100 Sobic001G309100 Sobic009G140700--Sobic001G309100 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic001G143500--Sobic002G313500 Sobic001G143500--Sobic004G350100 Sobic003G401100 Sobic003G401100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic001G143500--Sobic006G267300
Octagon: transcription factors


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