Gene annotation
Transcriptome id Sobic.007G086500.2
Synonym Sb07g007470
Functional annotation expressed protein
UniProt A0A1Z5R8Q4
Pfam -
Panther DB PTHR31570
NCBI CDD -
KEGG Orthology K16584; HAUS augmin-like complex subunit 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41350 : -
RAP-DB (Rice) LOC_Os08g14220.1 : expressed protein
MaizeGDB (Corn) Zm00025a030918
Brachypodium PNT66938 , PNT66937 , KQJ95722
Barley HORVU7Hr1G060640.1 , HORVU7Hr1G060640.3 , HORVU7Hr1G060640.4
Wheat TraesCS7A02G286800 , TraesCS7D02G287800 , TraesCS7B02G197500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G086500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G058300 ES43 protein, putative, expressed -
2 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
3 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
4 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
5 Sobic.001G131800 expressed protein K15186: ELL-associated factor
6 Sobic.010G028300 bromodomain domain containing protein, expressed -
7 Sobic.009G140700 PHD finger protein, putative, expressed -
8 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
9 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
10 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
11 Sobic.003G029100 frigida, putative, expressed -
12 Sobic.002G320500 MYB family transcription factor, putative, expressed -
13 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
14 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
15 Sobic.003G412300 expressed protein -
16 Sobic.002G224700 NFKB, putative, expressed -
17 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
18 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
19 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
20 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8


Gene co-expression network
sample Sobic007G086500 Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic007G086500--Sobic002G058300 Sobic001G010600 Sobic001G010600 Sobic007G086500--Sobic001G010600 Sobic001G375700 Sobic001G375700 Sobic007G086500--Sobic001G375700 Sobic007G132400 Sobic007G132400 Sobic007G086500--Sobic007G132400 Sobic001G131800 Sobic001G131800 Sobic007G086500--Sobic001G131800 Sobic010G028300 Sobic010G028300 Sobic007G086500--Sobic010G028300 Sobic009G140700 Sobic009G140700 Sobic007G086500--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic007G086500--Sobic001G143500 Sobic001G281600 Sobic001G281600 Sobic007G086500--Sobic001G281600 Sobic003G359300 Sobic003G359300 Sobic002G058300--Sobic003G359300 Sobic002G058300--Sobic007G086500 Sobic002G186000 Sobic002G186000 Sobic002G058300--Sobic002G186000 Sobic002G058300--Sobic001G010600 Sobic003G197800 Sobic003G197800 Sobic002G058300--Sobic003G197800 Sobic009G198100 Sobic009G198100 Sobic002G058300--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic002G058300--Sobic010G033400 Sobic006G267300 Sobic006G267300 Sobic002G058300--Sobic006G267300 Sobic007G205000 Sobic007G205000 Sobic002G058300--Sobic007G205000 Sobic001G010600--Sobic002G058300 Sobic001G010600--Sobic007G205000 Sobic001G010600--Sobic007G086500 Sobic001G226000 Sobic001G226000 Sobic001G010600--Sobic001G226000 Sobic003G115100 Sobic003G115100 Sobic001G010600--Sobic003G115100 Sobic001G010600--Sobic009G140700 Sobic004G013600 Sobic004G013600 Sobic001G010600--Sobic004G013600 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic004G084300 Sobic004G084300 Sobic001G375700--Sobic004G084300 Sobic002G126500 Sobic002G126500 Sobic001G375700--Sobic002G126500 Sobic001G375700--Sobic001G281600 Sobic001G375700--Sobic003G197800 Sobic001G107500 Sobic001G107500 Sobic001G375700--Sobic001G107500 Sobic007G136800 Sobic007G136800 Sobic001G375700--Sobic007G136800 Sobic007G054400 Sobic007G054400 Sobic001G375700--Sobic007G054400 Sobic008G113100 Sobic008G113100 Sobic001G375700--Sobic008G113100 Sobic001G227200 Sobic001G227200 Sobic001G375700--Sobic001G227200 Sobic007G132400--Sobic004G084300 Sobic003G241200 Sobic003G241200 Sobic007G132400--Sobic003G241200 Sobic008G067600 Sobic008G067600 Sobic007G132400--Sobic008G067600 Sobic007G104800 Sobic007G104800 Sobic007G132400--Sobic007G104800 Sobic003G220200 Sobic003G220200 Sobic007G132400--Sobic003G220200 Sobic007G132400--Sobic001G107500 Sobic003G081000 Sobic003G081000 Sobic007G132400--Sobic003G081000 Sobic002G320500 Sobic002G320500 Sobic007G132400--Sobic002G320500 Sobic002G310200 Sobic002G310200 Sobic007G132400--Sobic002G310200 Sobic008G174300 Sobic008G174300 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic001G131800--Sobic007G132400 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic001G131800--Sobic003G359300 Sobic003G401100 Sobic003G401100 Sobic010G028300--Sobic003G401100 Sobic002G350300 Sobic002G350300 Sobic010G028300--Sobic002G350300 Sobic001G056200 Sobic001G056200 Sobic010G028300--Sobic001G056200 Sobic006G121300 Sobic006G121300 Sobic010G028300--Sobic006G121300 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic008G179700 Sobic008G179700 Sobic010G028300--Sobic008G179700 Sobic010G028300--Sobic003G081000 Sobic010G028300--Sobic004G013600 Sobic009G140700--Sobic001G010600 Sobic009G140700--Sobic007G086500 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic003G045400 Sobic003G045400 Sobic009G140700--Sobic003G045400 Sobic009G140700--Sobic008G139700 Sobic010G211300 Sobic010G211300 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic001G309100 Sobic001G309100 Sobic009G140700--Sobic001G309100 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic001G143500--Sobic006G267300 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic001G281600--Sobic008G179700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.