Gene annotation
Transcriptome id Sobic.009G140700.1
Synonym Sb09g020610, AL6
Functional annotation PHD finger protein, putative, expressed
UniProt C5YY53
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF55
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT2G02470 : alfin-like 6
RAP-DB (Rice) LOC_Os05g34640.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a043724 , Zm00025a037391 , Zm00025a026509 , Zm00025a039480
Brachypodium -
Barley HORVU1Hr1G064250.4 , HORVU1Hr1G064250.2 , HORVU1Hr1G064250.3 , HORVU3Hr1G090540.15 , HORVU3Hr1G090540.14 , HORVU3Hr1G090540.16 , HORVU3Hr1G090540.11 , HORVU3Hr1G090540.10 , HORVU3Hr1G090540.13 , HORVU3Hr1G090540.12 , HORVU3Hr1G090540.9 , HORVU3Hr1G090540.8 , HORVU3Hr1G090540.1 , HORVU3Hr1G090540.3 , HORVU3Hr1G090540.2 , HORVU3Hr1G090540.5 , HORVU3Hr1G090540.4 , HORVU3Hr1G090540.7 , HORVU3Hr1G090540.6
Wheat TraesCS3A02G403600 , TraesCS3A02G403600 , TraesCS3B02G437100 , TraesCS1B02G272800 , TraesCS1B02G272800 , TraesCS1B02G272800 , TraesCS1D02G262200 , TraesCS3D02G398800 , TraesCS3D02G398800
Populus -


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cDNA sequences
Sobic.009G140700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
2 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
3 Sobic.002G058300 ES43 protein, putative, expressed -
4 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
5 Sobic.003G045400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
6 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
7 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
8 Sobic.001G009800 N-rich protein, putative, expressed -
9 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
10 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1
11 Sobic.006G038400 YL1 nuclear protein C-terminal domain containing protein, expressed K11667: INO80C, INO80 complex subunit C
12 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
13 Sobic.007G205000 zinc finger family protein, putative, expressed -
14 Sobic.001G056200 expressed protein -
15 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
16 Sobic.001G429400 wibg, putative, expressed K14294: WIBG, partner of Y14 and mago
17 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
18 Sobic.010G251100 - K03257: translation initiation factor 4A
19 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
20 Sobic.010G028300 bromodomain domain containing protein, expressed -


Gene co-expression network
sample Sobic009G140700 Sobic009G140700 Sobic001G010600 Sobic001G010600 Sobic009G140700--Sobic001G010600 Sobic007G086500 Sobic007G086500 Sobic009G140700--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic003G045400 Sobic003G045400 Sobic009G140700--Sobic003G045400 Sobic008G139700 Sobic008G139700 Sobic009G140700--Sobic008G139700 Sobic010G211300 Sobic010G211300 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic001G309100 Sobic001G309100 Sobic009G140700--Sobic001G309100 Sobic001G010600--Sobic002G058300 Sobic007G205000 Sobic007G205000 Sobic001G010600--Sobic007G205000 Sobic001G010600--Sobic007G086500 Sobic001G226000 Sobic001G226000 Sobic001G010600--Sobic001G226000 Sobic003G115100 Sobic003G115100 Sobic001G010600--Sobic003G115100 Sobic001G010600--Sobic009G140700 Sobic004G013600 Sobic004G013600 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic001G010600--Sobic008G139700 Sobic007G086500--Sobic002G058300 Sobic007G086500--Sobic001G010600 Sobic001G375700 Sobic001G375700 Sobic007G086500--Sobic001G375700 Sobic007G132400 Sobic007G132400 Sobic007G086500--Sobic007G132400 Sobic001G131800 Sobic001G131800 Sobic007G086500--Sobic001G131800 Sobic007G086500--Sobic010G028300 Sobic007G086500--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic007G086500--Sobic001G143500 Sobic001G281600 Sobic001G281600 Sobic007G086500--Sobic001G281600 Sobic003G359300 Sobic003G359300 Sobic002G058300--Sobic003G359300 Sobic002G058300--Sobic007G086500 Sobic002G186000 Sobic002G186000 Sobic002G058300--Sobic002G186000 Sobic002G058300--Sobic001G010600 Sobic003G197800 Sobic003G197800 Sobic002G058300--Sobic003G197800 Sobic009G198100 Sobic009G198100 Sobic002G058300--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic002G058300--Sobic010G033400 Sobic006G267300 Sobic006G267300 Sobic002G058300--Sobic006G267300 Sobic002G058300--Sobic007G205000 Sobic005G000800--Sobic010G211300 Sobic005G000800--Sobic004G013600 Sobic006G110300 Sobic006G110300 Sobic005G000800--Sobic006G110300 Sobic004G305600 Sobic004G305600 Sobic005G000800--Sobic004G305600 Sobic008G001100 Sobic008G001100 Sobic005G000800--Sobic008G001100 Sobic004G350100 Sobic004G350100 Sobic005G000800--Sobic004G350100 Sobic002G272600 Sobic002G272600 Sobic005G000800--Sobic002G272600 Sobic001G028400 Sobic001G028400 Sobic005G000800--Sobic001G028400 Sobic005G000800--Sobic010G033400 Sobic001G467000 Sobic001G467000 Sobic003G045400--Sobic001G467000 Sobic006G242300 Sobic006G242300 Sobic003G045400--Sobic006G242300 Sobic003G045400--Sobic010G211300 Sobic003G045400--Sobic008G139700 Sobic002G313500 Sobic002G313500 Sobic003G045400--Sobic002G313500 Sobic001G307900 Sobic001G307900 Sobic003G045400--Sobic001G307900 Sobic004G072800 Sobic004G072800 Sobic003G045400--Sobic004G072800 Sobic003G045400--Sobic009G140700 Sobic003G045400--Sobic001G143500 Sobic008G139700--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic008G139700--Sobic010G017800 Sobic001G080000 Sobic001G080000 Sobic008G139700--Sobic001G080000 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic008G139700--Sobic003G045400 Sobic008G139700--Sobic007G205000 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600 Sobic010G211300--Sobic001G028400 Sobic010G211300--Sobic004G013600 Sobic010G211300--Sobic006G267300 Sobic001G056200 Sobic001G056200 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G211300--Sobic010G033400 Sobic002G084300 Sobic002G084300 Sobic010G211300--Sobic002G084300 Sobic003G437500 Sobic003G437500 Sobic010G211300--Sobic003G437500 Sobic010G211300--Sobic005G000800 Sobic010G193800 Sobic010G193800 Sobic001G009800--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic001G009800--Sobic001G152000 Sobic006G183000 Sobic006G183000 Sobic001G009800--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic001G009800--Sobic002G268400 Sobic001G038100 Sobic001G038100 Sobic001G009800--Sobic001G038100 Sobic001G532100 Sobic001G532100 Sobic001G009800--Sobic001G532100 Sobic004G260400 Sobic004G260400 Sobic001G009800--Sobic004G260400 Sobic003G405700 Sobic003G405700 Sobic001G009800--Sobic003G405700 Sobic001G009800--Sobic009G140700 Sobic001G309100--Sobic001G038100 Sobic003G024800 Sobic003G024800 Sobic001G309100--Sobic003G024800 Sobic003G101300 Sobic003G101300 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic010G071200 Sobic010G071200 Sobic001G309100--Sobic010G071200 Sobic001G309100--Sobic003G437500 Sobic001G350501 Sobic001G350501 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100
Octagon: transcription factors


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