Gene annotation
Transcriptome id Sobic.001G009800.1
Synonym Sb01g000960
Functional annotation N-rich protein, putative, expressed
UniProt A0A1B6QGT2
Pfam PF10539
Panther DB PTHR10857 PTHR10857:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G27090 : DCD (Development and Cell Death) domain protein
RAP-DB (Rice) LOC_Os05g41930.2 : N-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a009065 , Zm00025a016322
Brachypodium KQK05565 , KQK05567 , KQK05566
Barley HORVU1Hr1G066630.4 , HORVU1Hr1G066630.1 , HORVU1Hr1G066630.2 , HORVU1Hr1G066630.3
Wheat TraesCS1A02G317200 , TraesCS1B02G329600 , TraesCS1B02G329600
Populus -


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cDNA sequences
Sobic.001G009800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
3 Sobic.006G183000 RING zinc finger protein, putative, expressed -
4 Sobic.002G268400 expressed protein -
5 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
6 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
7 Sobic.004G260400 expressed protein K07018: uncharacterized protein
8 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
9 Sobic.009G140700 PHD finger protein, putative, expressed -
10 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
11 Sobic.001G350501 - K11253: histone H3
12 Sobic.003G083900 metallo-beta-lactamase family protein, putative, expressed -
13 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
14 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
15 Sobic.002G129000 RING zinc finger protein, putative, expressed -
16 Sobic.003G420700 expressed protein -
17 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.001G329300 expressed protein -
19 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
20 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase


Gene co-expression network
sample Sobic001G009800 Sobic001G009800 Sobic010G193800 Sobic010G193800 Sobic001G009800--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic001G009800--Sobic001G152000 Sobic006G183000 Sobic006G183000 Sobic001G009800--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic001G009800--Sobic002G268400 Sobic001G038100 Sobic001G038100 Sobic001G009800--Sobic001G038100 Sobic001G532100 Sobic001G532100 Sobic001G009800--Sobic001G532100 Sobic004G260400 Sobic004G260400 Sobic001G009800--Sobic004G260400 Sobic003G405700 Sobic003G405700 Sobic001G009800--Sobic003G405700 Sobic009G140700 Sobic009G140700 Sobic001G009800--Sobic009G140700 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic009G033900 Sobic009G033900 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G152000--Sobic001G009800 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic002G268400--Sobic006G183000 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic002G204000 Sobic002G204000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G507400 Sobic001G507400 Sobic001G038100--Sobic001G507400 Sobic006G120800 Sobic006G120800 Sobic001G038100--Sobic006G120800 Sobic007G117100 Sobic007G117100 Sobic001G038100--Sobic007G117100 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic001G038100--Sobic004G260400 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic004G260400--Sobic001G038100 Sobic004G260400--Sobic001G009800 Sobic004G260400--Sobic006G183000 Sobic004G260400--Sobic004G186000 Sobic004G260400--Sobic001G309100 Sobic001G544100 Sobic001G544100 Sobic004G260400--Sobic001G544100 Sobic004G260400--Sobic003G405700 Sobic003G045400 Sobic003G045400 Sobic004G260400--Sobic003G045400 Sobic004G260400--Sobic002G204000 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic003G405700--Sobic006G183000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic003G405700--Sobic009G050700 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic001G010600 Sobic001G010600 Sobic009G140700--Sobic001G010600 Sobic007G086500 Sobic007G086500 Sobic009G140700--Sobic007G086500 Sobic002G058300 Sobic002G058300 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic009G140700--Sobic003G045400 Sobic008G139700 Sobic008G139700 Sobic009G140700--Sobic008G139700 Sobic010G211300 Sobic010G211300 Sobic009G140700--Sobic010G211300 Sobic009G140700--Sobic001G009800 Sobic009G140700--Sobic001G309100
Octagon: transcription factors


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