Gene annotation
Transcriptome id Sobic.001G329300.1
Synonym Sb01g031840
Functional annotation expressed protein
UniProt C5WVL3
Pfam PF04419 PF12907
Panther DB PTHR33788 PTHR33788:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23090 : Uncharacterised protein family SERF
RAP-DB (Rice) LOC_Os07g02340.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G329300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
2 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
3 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
4 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
5 Sobic.004G226800 expressed protein -
6 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
7 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
8 Sobic.001G350501 - K11253: histone H3
9 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.001G009800 N-rich protein, putative, expressed -
11 Sobic.004G212500 expressed protein K00550: phosphatidyl-N-methylethanolamine N-methyltransferase
12 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
13 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
15 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
16 Sobic.006G183000 RING zinc finger protein, putative, expressed -
17 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
18 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
19 Sobic.003G440800 vacuolar protein sorting 55 family protein, putative, expressed -
20 Sobic.001G543300 dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic001G329300 Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic001G329300--Sobic002G204000 Sobic006G011000 Sobic006G011000 Sobic001G329300--Sobic006G011000 Sobic007G226100 Sobic007G226100 Sobic001G329300--Sobic007G226100 Sobic006G252100 Sobic006G252100 Sobic001G329300--Sobic006G252100 Sobic004G226800 Sobic004G226800 Sobic001G329300--Sobic004G226800 Sobic006G094600 Sobic006G094600 Sobic001G329300--Sobic006G094600 Sobic004G316900 Sobic004G316900 Sobic001G329300--Sobic004G316900 Sobic001G350501 Sobic001G350501 Sobic001G329300--Sobic001G350501 Sobic010G193800 Sobic010G193800 Sobic001G329300--Sobic010G193800 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic002G204000--Sobic001G329300 Sobic002G204000--Sobic010G193800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic006G011000--Sobic006G094600 Sobic006G011000--Sobic001G329300 Sobic006G011000--Sobic002G204000 Sobic008G137600 Sobic008G137600 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic010G065400 Sobic010G065400 Sobic007G226100--Sobic010G065400 Sobic001G529000 Sobic001G529000 Sobic007G226100--Sobic001G529000 Sobic001G439600 Sobic001G439600 Sobic007G226100--Sobic001G439600 Sobic005G157200 Sobic005G157200 Sobic007G226100--Sobic005G157200 Sobic001G315500 Sobic001G315500 Sobic007G226100--Sobic001G315500 Sobic005G111100 Sobic005G111100 Sobic007G226100--Sobic005G111100 Sobic007G226100--Sobic010G193800 Sobic003G055500 Sobic003G055500 Sobic007G226100--Sobic003G055500 Sobic003G329800 Sobic003G329800 Sobic007G226100--Sobic003G329800 Sobic002G268400 Sobic002G268400 Sobic006G252100--Sobic002G268400 Sobic001G152000 Sobic001G152000 Sobic006G252100--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic006G252100--Sobic009G033900 Sobic006G216000 Sobic006G216000 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic004G074300 Sobic004G074300 Sobic006G252100--Sobic004G074300 Sobic001G370300 Sobic001G370300 Sobic006G252100--Sobic001G370300 Sobic004G356900 Sobic004G356900 Sobic004G226800--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G226800--Sobic006G049700 Sobic002G256300 Sobic002G256300 Sobic004G226800--Sobic002G256300 Sobic002G113900 Sobic002G113900 Sobic004G226800--Sobic002G113900 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic004G226800--Sobic002G204000 Sobic004G232800 Sobic004G232800 Sobic004G226800--Sobic004G232800 Sobic006G094600--Sobic008G137600 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic004G316900--Sobic001G136900 Sobic004G316900--Sobic002G204000 Sobic004G316900--Sobic002G256300 Sobic004G316900--Sobic001G529000 Sobic003G316850 Sobic003G316850 Sobic004G316900--Sobic003G316850 Sobic004G316900--Sobic010G193800 Sobic004G316900--Sobic004G226800 Sobic007G203700 Sobic007G203700 Sobic004G316900--Sobic007G203700 Sobic004G316900--Sobic001G439600 Sobic003G024800 Sobic003G024800 Sobic001G350501--Sobic003G024800 Sobic004G349100 Sobic004G349100 Sobic001G350501--Sobic004G349100 Sobic001G309100 Sobic001G309100 Sobic001G350501--Sobic001G309100 Sobic001G350501--Sobic010G193800 Sobic008G142700 Sobic008G142700 Sobic001G350501--Sobic008G142700 Sobic009G034400 Sobic009G034400 Sobic001G350501--Sobic009G034400 Sobic003G420700 Sobic003G420700 Sobic001G350501--Sobic003G420700 Sobic009G036900 Sobic009G036900 Sobic001G350501--Sobic009G036900 Sobic007G063200 Sobic007G063200 Sobic001G350501--Sobic007G063200 Sobic010G193800--Sobic003G420700 Sobic010G193800--Sobic004G356900 Sobic010G193800--Sobic002G256300 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic010G193800--Sobic007G203700 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950
Octagon: transcription factors


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