Gene annotation
Transcriptome id Sobic.004G212500.1
Synonym Sb04g025780, ATPLMT, PLMT
Functional annotation expressed protein
UniProt C5XXB9
Pfam PF04191
Panther DB PTHR15458
NCBI CDD -
KEGG Orthology K00550; phosphatidyl-N-methylethanolamine N-methyltransferase
Gene Ontology GO:0008170; N-methyltransferase activity GO:0006644phospholipid metabolic process


Orthologs (automatic annotation)
TAIR AT1G80860 : phospholipid N-methyltransferase
RAP-DB (Rice) LOC_Os02g39880.1 : expressed protein
MaizeGDB (Corn) Zm00025a031936
Brachypodium KQK00302
Barley -
Wheat TraesCS6A02G232000 , TraesCS6D02G203200 , TraesCS6B02G249600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G212500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G004400 tRNA methyltransferase complex GCD14 subunit, putative, expressed K07442: TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
2 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
3 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
4 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
5 Sobic.006G183000 RING zinc finger protein, putative, expressed -
6 Sobic.001G329300 expressed protein -
7 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
9 Sobic.001G398600 anaphase-promoting complex subunit 11, putative, expressed K03358: anaphase-promoting complex subunit 11
10 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
11 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
12 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
13 Sobic.001G009800 N-rich protein, putative, expressed -
14 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
15 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
16 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
17 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
18 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
19 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
20 Sobic.008G058300 RNA polymerases N 8 kDa subunit, putative, expressed K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5


Gene co-expression network
sample Sobic004G212500 Sobic004G212500 Sobic009G004400 Sobic009G004400 Sobic004G212500--Sobic009G004400 Sobic001G532100 Sobic001G532100 Sobic004G212500--Sobic001G532100 Sobic001G491100 Sobic001G491100 Sobic004G212500--Sobic001G491100 Sobic009G130400 Sobic009G130400 Sobic004G212500--Sobic009G130400 Sobic006G183000 Sobic006G183000 Sobic004G212500--Sobic006G183000 Sobic001G329300 Sobic001G329300 Sobic004G212500--Sobic001G329300 Sobic009G174900 Sobic009G174900 Sobic004G212500--Sobic009G174900 Sobic007G152400 Sobic007G152400 Sobic004G212500--Sobic007G152400 Sobic001G398600 Sobic001G398600 Sobic004G212500--Sobic001G398600 Sobic010G205300 Sobic010G205300 Sobic009G004400--Sobic010G205300 Sobic009G004400--Sobic001G491100 Sobic007G014900 Sobic007G014900 Sobic009G004400--Sobic007G014900 Sobic009G004400--Sobic004G212500 Sobic001G294900 Sobic001G294900 Sobic009G004400--Sobic001G294900 Sobic008G137600 Sobic008G137600 Sobic009G004400--Sobic008G137600 Sobic002G341800 Sobic002G341800 Sobic009G004400--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic009G004400--Sobic004G194900 Sobic009G212300 Sobic009G212300 Sobic009G004400--Sobic009G212300 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic001G491100--Sobic009G174900 Sobic007G019100 Sobic007G019100 Sobic001G491100--Sobic007G019100 Sobic001G481700 Sobic001G481700 Sobic001G491100--Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G491100--Sobic001G025600 Sobic003G196800 Sobic003G196800 Sobic001G491100--Sobic003G196800 Sobic002G078400 Sobic002G078400 Sobic001G491100--Sobic002G078400 Sobic001G491100--Sobic009G004400 Sobic001G502200 Sobic001G502200 Sobic001G491100--Sobic001G502200 Sobic001G491100--Sobic008G137600 Sobic001G404100 Sobic001G404100 Sobic009G130400--Sobic001G404100 Sobic001G096100 Sobic001G096100 Sobic009G130400--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic009G130400--Sobic006G281200 Sobic008G058300 Sobic008G058300 Sobic009G130400--Sobic008G058300 Sobic010G013900 Sobic010G013900 Sobic009G130400--Sobic010G013900 Sobic003G028100 Sobic003G028100 Sobic009G130400--Sobic003G028100 Sobic009G130400--Sobic001G502200 Sobic009G130400--Sobic002G341800 Sobic004G248900 Sobic004G248900 Sobic009G130400--Sobic004G248900 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic002G204000 Sobic002G204000 Sobic001G329300--Sobic002G204000 Sobic006G011000 Sobic006G011000 Sobic001G329300--Sobic006G011000 Sobic007G226100 Sobic007G226100 Sobic001G329300--Sobic007G226100 Sobic006G252100 Sobic006G252100 Sobic001G329300--Sobic006G252100 Sobic004G226800 Sobic004G226800 Sobic001G329300--Sobic004G226800 Sobic001G329300--Sobic006G094600 Sobic004G316900 Sobic004G316900 Sobic001G329300--Sobic004G316900 Sobic001G350501 Sobic001G350501 Sobic001G329300--Sobic001G350501 Sobic001G329300--Sobic010G193800 Sobic003G337000 Sobic003G337000 Sobic009G174900--Sobic003G337000 Sobic002G400000 Sobic002G400000 Sobic009G174900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic009G174900--Sobic004G327300 Sobic009G135600 Sobic009G135600 Sobic009G174900--Sobic009G135600 Sobic007G168600 Sobic007G168600 Sobic009G174900--Sobic007G168600 Sobic006G212100 Sobic006G212100 Sobic009G174900--Sobic006G212100 Sobic009G174900--Sobic001G491100 Sobic002G134001 Sobic002G134001 Sobic009G174900--Sobic002G134001 Sobic001G054200 Sobic001G054200 Sobic009G174900--Sobic001G054200 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic001G398600--Sobic005G111100 Sobic001G398600--Sobic001G532100 Sobic007G167700 Sobic007G167700 Sobic001G398600--Sobic007G167700 Sobic002G044000 Sobic002G044000 Sobic001G398600--Sobic002G044000 Sobic001G398600--Sobic009G212300 Sobic006G016200 Sobic006G016200 Sobic001G398600--Sobic006G016200 Sobic001G398600--Sobic007G152400 Sobic001G126200 Sobic001G126200 Sobic001G398600--Sobic001G126200 Sobic004G012800 Sobic004G012800 Sobic001G398600--Sobic004G012800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.