Gene annotation
Transcriptome id Sobic.009G004400.1
Synonym Sb09g000590
Functional annotation tRNA methyltransferase complex GCD14 subunit, putative, expressed
UniProt C5YY11
Pfam PF13847
Panther DB PTHR12133 PTHR12133:SF2
NCBI CDD KOG2915; tRNA(1-methyladenosine) methyltransferase, subunit GCD14
KEGG Orthology K07442; TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G14600 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os04g25360.1 : tRNA methyltransferase complex GCD14 subunit, putative, expressed
MaizeGDB (Corn) Zm00025a009833
Brachypodium KQJ82003 , PNT60784
Barley HORVU2Hr1G066740.2 , HORVU2Hr1G066740.1
Wheat TraesCS2D02G272600 , TraesCS2A02G273600
Populus -


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cDNA sequences
Sobic.009G004400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G205300 secreted salivary protein, putative, expressed -
2 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
3 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
4 Sobic.004G212500 expressed protein K00550: phosphatidyl-N-methylethanolamine N-methyltransferase
5 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
6 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.004G194900 expressed protein -
9 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
10 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
11 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
12 Sobic.003G196800 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
13 Sobic.006G225300 expressed protein -
14 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
15 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
16 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
17 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
18 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
19 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
20 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31


Gene co-expression network
sample Sobic009G004400 Sobic009G004400 Sobic010G205300 Sobic010G205300 Sobic009G004400--Sobic010G205300 Sobic001G491100 Sobic001G491100 Sobic009G004400--Sobic001G491100 Sobic007G014900 Sobic007G014900 Sobic009G004400--Sobic007G014900 Sobic004G212500 Sobic004G212500 Sobic009G004400--Sobic004G212500 Sobic001G294900 Sobic001G294900 Sobic009G004400--Sobic001G294900 Sobic008G137600 Sobic008G137600 Sobic009G004400--Sobic008G137600 Sobic002G341800 Sobic002G341800 Sobic009G004400--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic009G004400--Sobic004G194900 Sobic009G212300 Sobic009G212300 Sobic009G004400--Sobic009G212300 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic009G174900 Sobic009G174900 Sobic001G491100--Sobic009G174900 Sobic007G019100 Sobic007G019100 Sobic001G491100--Sobic007G019100 Sobic001G481700 Sobic001G481700 Sobic001G491100--Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G491100--Sobic001G025600 Sobic003G196800 Sobic003G196800 Sobic001G491100--Sobic003G196800 Sobic002G078400 Sobic002G078400 Sobic001G491100--Sobic002G078400 Sobic001G491100--Sobic009G004400 Sobic001G491100--Sobic001G502200 Sobic001G491100--Sobic008G137600 Sobic001G085100 Sobic001G085100 Sobic007G014900--Sobic001G085100 Sobic007G014900--Sobic004G356900 Sobic007G014900--Sobic010G205300 Sobic006G225300 Sobic006G225300 Sobic007G014900--Sobic006G225300 Sobic007G167900 Sobic007G167900 Sobic007G014900--Sobic007G167900 Sobic006G183000 Sobic006G183000 Sobic007G014900--Sobic006G183000 Sobic003G312200 Sobic003G312200 Sobic007G014900--Sobic003G312200 Sobic007G014900--Sobic004G194900 Sobic007G188300 Sobic007G188300 Sobic007G014900--Sobic007G188300 Sobic004G212500--Sobic009G004400 Sobic001G532100 Sobic001G532100 Sobic004G212500--Sobic001G532100 Sobic004G212500--Sobic001G491100 Sobic009G130400 Sobic009G130400 Sobic004G212500--Sobic009G130400 Sobic004G212500--Sobic006G183000 Sobic001G329300 Sobic001G329300 Sobic004G212500--Sobic001G329300 Sobic004G212500--Sobic009G174900 Sobic007G152400 Sobic007G152400 Sobic004G212500--Sobic007G152400 Sobic001G398600 Sobic001G398600 Sobic004G212500--Sobic001G398600 Sobic001G294900--Sobic008G137600 Sobic001G294900--Sobic003G349300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic006G109700 Sobic006G109700 Sobic001G294900--Sobic006G109700 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic008G137600--Sobic006G109700 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic004G194900--Sobic010G205300 Sobic004G194900--Sobic002G281300 Sobic004G194900--Sobic006G044600 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic004G194900--Sobic001G458700 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic009G234400 Sobic009G234400 Sobic009G212300--Sobic009G234400 Sobic009G212300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic009G212300--Sobic001G404100 Sobic007G217400 Sobic007G217400 Sobic009G212300--Sobic007G217400 Sobic009G212300--Sobic001G481700 Sobic006G211800 Sobic006G211800 Sobic009G212300--Sobic006G211800
Octagon: transcription factors


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