Gene annotation
Transcriptome id Sobic.007G014900.2,Sobic.007G014900.1
Synonym Sb07g001340, CHIP, ATCHIP
Functional annotation STIP1 homology and U box-containing protein 1, putative, expressed
UniProt C5YLZ4
Pfam PF13414 PF04564
Panther DB PTHR22904 PTHR22904:SF363
NCBI CDD KOG4642; Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)
KEGG Orthology K09561; STUB1, STIP1 homology and U-box containing protein 1
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G07370 : carboxyl terminus of HSC70-interacting protein
RAP-DB (Rice) LOC_Os08g02140.2 : STIP1 homology and U box-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a040237 , Zm00025a027394
Brachypodium KQJ94849 , PNT66528
Barley HORVU7Hr1G076230.7 , HORVU7Hr1G076230.6 , HORVU7Hr1G076230.5 , HORVU7Hr1G076230.4 , HORVU7Hr1G076230.3 , HORVU7Hr1G076230.2 , HORVU7Hr1G076230.8 , HORVU7Hr1G076230.1 , HORVU7Hr1G076230.9 , HORVU7Hr1G076230.13 , HORVU7Hr1G076230.12 , HORVU7Hr1G076230.11 , HORVU7Hr1G076230.10 , HORVU1Hr1G002240.3 , HORVU1Hr1G002240.2 , HORVU1Hr1G002240.1 , HORVU1Hr1G002240.7 , HORVU1Hr1G002240.6 , HORVU1Hr1G002240.5 , HORVU1Hr1G002240.4 , HORVU7Hr1G076230.14
Wheat TraesCS7B02G219600 , TraesCS7D02G315300 , TraesCS1D02G011600 , TraesCS7A02G318700 , TraesCS1B02G017900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085100 expressed protein -
2 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
3 Sobic.010G205300 secreted salivary protein, putative, expressed -
4 Sobic.006G225300 expressed protein -
5 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
6 Sobic.006G183000 RING zinc finger protein, putative, expressed -
7 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
8 Sobic.004G194900 expressed protein -
9 Sobic.007G188300 integral membrane family protein, putative, expressed -
10 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
11 Sobic.009G083200 coiled-coil domain-containing protein 25, putative, expressed -
12 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
13 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
14 Sobic.009G004400 tRNA methyltransferase complex GCD14 subunit, putative, expressed K07442: TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
15 Sobic.001G093300 emp24/gp25L/p24 family protein, putative, expressed -
16 Sobic.004G348900 expressed protein -
17 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
18 Sobic.003G102600 K-dependent Na/Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed K13754: SLC24A6, solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
19 Sobic.001G261436 - -
20 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein


Gene co-expression network
sample Sobic007G014900 Sobic007G014900 Sobic001G085100 Sobic001G085100 Sobic007G014900--Sobic001G085100 Sobic004G356900 Sobic004G356900 Sobic007G014900--Sobic004G356900 Sobic010G205300 Sobic010G205300 Sobic007G014900--Sobic010G205300 Sobic006G225300 Sobic006G225300 Sobic007G014900--Sobic006G225300 Sobic007G167900 Sobic007G167900 Sobic007G014900--Sobic007G167900 Sobic006G183000 Sobic006G183000 Sobic007G014900--Sobic006G183000 Sobic003G312200 Sobic003G312200 Sobic007G014900--Sobic003G312200 Sobic004G194900 Sobic004G194900 Sobic007G014900--Sobic004G194900 Sobic007G188300 Sobic007G188300 Sobic007G014900--Sobic007G188300 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic004G066200 Sobic004G066200 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic001G294900 Sobic001G294900 Sobic006G225300--Sobic001G294900 Sobic003G201900 Sobic003G201900 Sobic006G225300--Sobic003G201900 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic001G439600 Sobic001G439600 Sobic006G225300--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic006G225300--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic006G225300--Sobic001G532100 Sobic004G104900 Sobic004G104900 Sobic006G225300--Sobic004G104900 Sobic009G135600 Sobic009G135600 Sobic006G225300--Sobic009G135600 Sobic007G167900--Sobic001G085100 Sobic009G192000 Sobic009G192000 Sobic007G167900--Sobic009G192000 Sobic004G092500 Sobic004G092500 Sobic007G167900--Sobic004G092500 Sobic007G167900--Sobic001G206900 Sobic002G047700 Sobic002G047700 Sobic007G167900--Sobic002G047700 Sobic007G167900--Sobic006G101700 Sobic010G020400 Sobic010G020400 Sobic007G167900--Sobic010G020400 Sobic009G222500 Sobic009G222500 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic010G130000 Sobic010G130000 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic004G194900--Sobic010G205300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic001G458700 Sobic001G458700 Sobic004G194900--Sobic001G458700 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic009G149500 Sobic009G149500 Sobic007G188300--Sobic009G149500 Sobic007G188300--Sobic001G085100 Sobic007G188300--Sobic010G205300 Sobic006G244700 Sobic006G244700 Sobic007G188300--Sobic006G244700 Sobic001G263000 Sobic001G263000 Sobic007G188300--Sobic001G263000 Sobic001G014800 Sobic001G014800 Sobic007G188300--Sobic001G014800 Sobic007G188300--Sobic007G014900 Sobic007G188300--Sobic004G356900 Sobic002G209400 Sobic002G209400 Sobic007G188300--Sobic002G209400
Octagon: transcription factors


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