Gene annotation
Transcriptome id Sobic.003G102600.2,Sobic.003G102600.3,Sobic.003G102600.4
Synonym ATCCX4, Sb03g008600, CCX4
Functional annotation K-dependent Na/Ca exchanger (PubMedID : 22196357)
sodium/calcium exchanger protein, putative, expressed
UniProt C5XEZ5
Pfam PF01699
Panther DB PTHR12266 PTHR12266:SF9
NCBI CDD KOG2399; K+-dependent Na+:Ca2+ antiporter
KEGG Orthology K13754; SLC24A6, solute carrier family 24 (sodium/potassium/calcium exchanger), member 6
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G54115 : cation calcium exchanger 4
RAP-DB (Rice) LOC_Os03g08230.1 : sodium/calcium exchanger protein, putative, expressed
MaizeGDB (Corn) Zm00025a023806 , Zm00025a035420
Brachypodium KQK23325
Barley HORVU4Hr1G076630.1 , HORVU5Hr1G055130.1 , HORVU5Hr1G055130.2
Wheat TraesCS4D02G294600
Populus -


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cDNA sequences
Sobic.003G102600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
2 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
4 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
5 Sobic.001G332300 expressed protein -
6 Sobic.009G051700 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
7 Sobic.009G174000 expressed protein -
8 Sobic.001G444300 expressed protein -
9 Sobic.003G127300 expressed protein -
10 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
11 Sobic.007G028500 expressed protein -
12 Sobic.002G238400 expressed protein -
13 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
14 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
15 Sobic.007G188300 integral membrane family protein, putative, expressed -
16 Sobic.003G277000 expressed protein -
17 Sobic.006G158332 - -
18 Sobic.004G348900 expressed protein -
19 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
20 Sobic.002G294100 DOMON domain containing protein, expressed -


Gene co-expression network
sample Sobic003G102600 Sobic003G102600 Sobic007G014900 Sobic007G014900 Sobic003G102600--Sobic007G014900 Sobic001G378200 Sobic001G378200 Sobic003G102600--Sobic001G378200 Sobic006G109700 Sobic006G109700 Sobic003G102600--Sobic006G109700 Sobic006G029000 Sobic006G029000 Sobic003G102600--Sobic006G029000 Sobic001G332300 Sobic001G332300 Sobic003G102600--Sobic001G332300 Sobic009G051700 Sobic009G051700 Sobic003G102600--Sobic009G051700 Sobic009G174000 Sobic009G174000 Sobic003G102600--Sobic009G174000 Sobic001G444300 Sobic001G444300 Sobic003G102600--Sobic001G444300 Sobic003G127300 Sobic003G127300 Sobic003G102600--Sobic003G127300 Sobic001G085100 Sobic001G085100 Sobic007G014900--Sobic001G085100 Sobic004G356900 Sobic004G356900 Sobic007G014900--Sobic004G356900 Sobic010G205300 Sobic010G205300 Sobic007G014900--Sobic010G205300 Sobic006G225300 Sobic006G225300 Sobic007G014900--Sobic006G225300 Sobic007G167900 Sobic007G167900 Sobic007G014900--Sobic007G167900 Sobic006G183000 Sobic006G183000 Sobic007G014900--Sobic006G183000 Sobic003G312200 Sobic003G312200 Sobic007G014900--Sobic003G312200 Sobic004G194900 Sobic004G194900 Sobic007G014900--Sobic004G194900 Sobic007G188300 Sobic007G188300 Sobic007G014900--Sobic007G188300 Sobic001G465400 Sobic001G465400 Sobic001G378200--Sobic001G465400 Sobic001G112400 Sobic001G112400 Sobic001G378200--Sobic001G112400 Sobic006G012700 Sobic006G012700 Sobic001G378200--Sobic006G012700 Sobic004G078700 Sobic004G078700 Sobic001G378200--Sobic004G078700 Sobic004G039400 Sobic004G039400 Sobic001G378200--Sobic004G039400 Sobic001G443200 Sobic001G443200 Sobic001G378200--Sobic001G443200 Sobic001G008100 Sobic001G008100 Sobic001G378200--Sobic001G008100 Sobic002G262200 Sobic002G262200 Sobic001G378200--Sobic002G262200 Sobic005G207400 Sobic005G207400 Sobic001G378200--Sobic005G207400 Sobic008G137600 Sobic008G137600 Sobic006G109700--Sobic008G137600 Sobic006G109700--Sobic001G444300 Sobic006G109700--Sobic006G183000 Sobic001G294900 Sobic001G294900 Sobic006G109700--Sobic001G294900 Sobic009G168000 Sobic009G168000 Sobic006G109700--Sobic009G168000 Sobic006G211800 Sobic006G211800 Sobic006G109700--Sobic006G211800 Sobic006G231500 Sobic006G231500 Sobic006G109700--Sobic006G231500 Sobic004G348900 Sobic004G348900 Sobic006G109700--Sobic004G348900 Sobic001G502200 Sobic001G502200 Sobic006G109700--Sobic001G502200 Sobic005G111900 Sobic005G111900 Sobic006G029000--Sobic005G111900 Sobic001G077900 Sobic001G077900 Sobic006G029000--Sobic001G077900 Sobic009G149500 Sobic009G149500 Sobic006G029000--Sobic009G149500 Sobic006G029000--Sobic001G112400 Sobic001G338400 Sobic001G338400 Sobic006G029000--Sobic001G338400 Sobic006G029000--Sobic001G443200 Sobic009G089700 Sobic009G089700 Sobic006G029000--Sobic009G089700 Sobic004G181900 Sobic004G181900 Sobic006G029000--Sobic004G181900 Sobic003G196200 Sobic003G196200 Sobic006G029000--Sobic003G196200 Sobic005G184200 Sobic005G184200 Sobic001G332300--Sobic005G184200 Sobic001G332300--Sobic001G378200 Sobic004G025300 Sobic004G025300 Sobic001G332300--Sobic004G025300 Sobic001G332300--Sobic001G112400 Sobic001G404200 Sobic001G404200 Sobic001G332300--Sobic001G404200 Sobic001G358500 Sobic001G358500 Sobic001G332300--Sobic001G358500 Sobic006G083100 Sobic006G083100 Sobic001G332300--Sobic006G083100 Sobic003G374000 Sobic003G374000 Sobic001G332300--Sobic003G374000 Sobic002G136400 Sobic002G136400 Sobic001G332300--Sobic002G136400 Sobic009G051700--Sobic003G102600 Sobic010G267400 Sobic010G267400 Sobic009G051700--Sobic010G267400 Sobic002G422400 Sobic002G422400 Sobic009G051700--Sobic002G422400 Sobic002G294100 Sobic002G294100 Sobic009G051700--Sobic002G294100 Sobic006G158332 Sobic006G158332 Sobic009G051700--Sobic006G158332 Sobic007G140600 Sobic007G140600 Sobic009G051700--Sobic007G140600 Sobic010G178800 Sobic010G178800 Sobic009G051700--Sobic010G178800 Sobic006G237200 Sobic006G237200 Sobic009G051700--Sobic006G237200 Sobic009G051700--Sobic006G029000 Sobic001G431000 Sobic001G431000 Sobic009G174000--Sobic001G431000 Sobic005G155800 Sobic005G155800 Sobic009G174000--Sobic005G155800 Sobic001G413200 Sobic001G413200 Sobic009G174000--Sobic001G413200 Sobic007G203300 Sobic007G203300 Sobic009G174000--Sobic007G203300 Sobic009G174000--Sobic003G102600 Sobic010G230600 Sobic010G230600 Sobic009G174000--Sobic010G230600 Sobic004G253900 Sobic004G253900 Sobic009G174000--Sobic004G253900 Sobic006G087400 Sobic006G087400 Sobic009G174000--Sobic006G087400 Sobic004G227300 Sobic004G227300 Sobic009G174000--Sobic004G227300 Sobic001G145500 Sobic001G145500 Sobic001G444300--Sobic001G145500 Sobic001G444300--Sobic006G109700 Sobic002G423800 Sobic002G423800 Sobic001G444300--Sobic002G423800 Sobic001G444300--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic001G444300--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G444300--Sobic006G252200 Sobic002G428200 Sobic002G428200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic001G444300--Sobic004G348900 Sobic009G199700 Sobic009G199700 Sobic003G127300--Sobic009G199700 Sobic001G364600 Sobic001G364600 Sobic003G127300--Sobic001G364600 Sobic002G298300 Sobic002G298300 Sobic003G127300--Sobic002G298300 Sobic001G341500 Sobic001G341500 Sobic003G127300--Sobic001G341500 Sobic004G060600 Sobic004G060600 Sobic003G127300--Sobic004G060600 Sobic004G074300 Sobic004G074300 Sobic003G127300--Sobic004G074300 Sobic002G242200 Sobic002G242200 Sobic003G127300--Sobic002G242200 Sobic003G405900 Sobic003G405900 Sobic003G127300--Sobic003G405900 Sobic003G127300--Sobic008G137600
Octagon: transcription factors


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