Gene annotation
Transcriptome id Sobic.001G093300.1
Synonym Sb01g008390
Functional annotation emp24/gp25L/p24 family protein, putative, expressed
UniProt C5X178
Pfam PF01105
Panther DB PTHR22811 PTHR22811:SF31
NCBI CDD KOG1692; Putative cargo transport protein EMP24 (p24 protein family)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G22845 : emp24/gp25L/p24 family/GOLD family protein
RAP-DB (Rice) LOC_Os03g53310.1 : emp24/gp25L/p24 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a016823 , Zm00025a008108
Brachypodium KQK13251
Barley HORVU5Hr1G094410.1 , HORVU5Hr1G094410.2
Wheat TraesCS5D02G393100 , TraesCS5B02G388300 , TraesCS5A02G383700
Populus -


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cDNA sequences
Sobic.001G093300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
2 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
3 Sobic.006G183000 RING zinc finger protein, putative, expressed -
4 Sobic.009G199700 expressed protein -
5 Sobic.003G189900 expressed protein -
6 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
7 Sobic.006G034800 neighbor of COX4, putative, expressed -
8 Sobic.002G129000 RING zinc finger protein, putative, expressed -
9 Sobic.009G160600 Yip1 domain containing protein, expressed -
10 Sobic.004G186000 salt tolerant protein, putative, expressed -
11 Sobic.006G225300 expressed protein -
12 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
13 Sobic.002G398000 SFT2, putative, expressed -
14 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
15 Sobic.009G004400 tRNA methyltransferase complex GCD14 subunit, putative, expressed K07442: TRM61, tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit
16 Sobic.010G000300 transmembrane BAX inhibitor motif-containing protein, putative, expressed -
17 Sobic.001G127100 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
18 Sobic.001G430800 GA17271-PA, putative, expressed -
19 Sobic.009G050700 importin subunit alpha, putative, expressed -
20 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3


Gene co-expression network
sample Sobic001G093300 Sobic001G093300 Sobic007G014900 Sobic007G014900 Sobic001G093300--Sobic007G014900 Sobic009G033900 Sobic009G033900 Sobic001G093300--Sobic009G033900 Sobic006G183000 Sobic006G183000 Sobic001G093300--Sobic006G183000 Sobic009G199700 Sobic009G199700 Sobic001G093300--Sobic009G199700 Sobic003G189900 Sobic003G189900 Sobic001G093300--Sobic003G189900 Sobic006G002500 Sobic006G002500 Sobic001G093300--Sobic006G002500 Sobic006G034800 Sobic006G034800 Sobic001G093300--Sobic006G034800 Sobic002G129000 Sobic002G129000 Sobic001G093300--Sobic002G129000 Sobic009G160600 Sobic009G160600 Sobic001G093300--Sobic009G160600 Sobic001G085100 Sobic001G085100 Sobic007G014900--Sobic001G085100 Sobic004G356900 Sobic004G356900 Sobic007G014900--Sobic004G356900 Sobic010G205300 Sobic010G205300 Sobic007G014900--Sobic010G205300 Sobic006G225300 Sobic006G225300 Sobic007G014900--Sobic006G225300 Sobic007G167900 Sobic007G167900 Sobic007G014900--Sobic007G167900 Sobic007G014900--Sobic006G183000 Sobic003G312200 Sobic003G312200 Sobic007G014900--Sobic003G312200 Sobic004G194900 Sobic004G194900 Sobic007G014900--Sobic004G194900 Sobic007G188300 Sobic007G188300 Sobic007G014900--Sobic007G188300 Sobic009G033900--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic006G183000--Sobic002G129000 Sobic001G294900 Sobic001G294900 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic003G127300 Sobic003G127300 Sobic009G199700--Sobic003G127300 Sobic007G203700 Sobic007G203700 Sobic009G199700--Sobic007G203700 Sobic002G298300 Sobic002G298300 Sobic009G199700--Sobic002G298300 Sobic002G368400 Sobic002G368400 Sobic009G199700--Sobic002G368400 Sobic007G079700 Sobic007G079700 Sobic009G199700--Sobic007G079700 Sobic009G246950 Sobic009G246950 Sobic009G199700--Sobic009G246950 Sobic004G060600 Sobic004G060600 Sobic009G199700--Sobic004G060600 Sobic002G123200 Sobic002G123200 Sobic009G199700--Sobic002G123200 Sobic002G078400 Sobic002G078400 Sobic009G199700--Sobic002G078400 Sobic001G390500 Sobic001G390500 Sobic003G189900--Sobic001G390500 Sobic001G309100 Sobic001G309100 Sobic003G189900--Sobic001G309100 Sobic008G108500 Sobic008G108500 Sobic003G189900--Sobic008G108500 Sobic007G038800 Sobic007G038800 Sobic003G189900--Sobic007G038800 Sobic002G176400 Sobic002G176400 Sobic003G189900--Sobic002G176400 Sobic003G311000 Sobic003G311000 Sobic003G189900--Sobic003G311000 Sobic001G083600 Sobic001G083600 Sobic003G189900--Sobic001G083600 Sobic003G189900--Sobic006G002500 Sobic010G071200 Sobic010G071200 Sobic003G189900--Sobic010G071200 Sobic006G002500--Sobic009G246950 Sobic002G256300 Sobic002G256300 Sobic006G002500--Sobic002G256300 Sobic006G002500--Sobic001G390500 Sobic006G002500--Sobic007G203700 Sobic001G532100 Sobic001G532100 Sobic006G002500--Sobic001G532100 Sobic010G193800 Sobic010G193800 Sobic006G002500--Sobic010G193800 Sobic001G512900 Sobic001G512900 Sobic006G002500--Sobic001G512900 Sobic003G038600 Sobic003G038600 Sobic006G002500--Sobic003G038600 Sobic006G002500--Sobic003G189900 Sobic006G257001 Sobic006G257001 Sobic006G034800--Sobic006G257001 Sobic001G105100 Sobic001G105100 Sobic006G034800--Sobic001G105100 Sobic001G067900 Sobic001G067900 Sobic006G034800--Sobic001G067900 Sobic003G400100 Sobic003G400100 Sobic006G034800--Sobic003G400100 Sobic001G041200 Sobic001G041200 Sobic006G034800--Sobic001G041200 Sobic006G034800--Sobic010G205300 Sobic010G105600 Sobic010G105600 Sobic006G034800--Sobic010G105600 Sobic001G206900 Sobic001G206900 Sobic006G034800--Sobic001G206900 Sobic002G131900 Sobic002G131900 Sobic006G034800--Sobic002G131900 Sobic002G129000--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic002G129000--Sobic001G439600 Sobic002G129000--Sobic009G050700 Sobic002G129000--Sobic001G294900 Sobic002G400000 Sobic002G400000 Sobic002G129000--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic002G129000--Sobic010G168600 Sobic002G129000--Sobic001G136900 Sobic006G263900 Sobic006G263900 Sobic002G129000--Sobic006G263900 Sobic002G129000--Sobic003G405700 Sobic001G005600 Sobic001G005600 Sobic009G160600--Sobic001G005600 Sobic001G161900 Sobic001G161900 Sobic009G160600--Sobic001G161900 Sobic003G382900 Sobic003G382900 Sobic009G160600--Sobic003G382900 Sobic004G323700 Sobic004G323700 Sobic009G160600--Sobic004G323700 Sobic003G005200 Sobic003G005200 Sobic009G160600--Sobic003G005200 Sobic003G150900 Sobic003G150900 Sobic009G160600--Sobic003G150900 Sobic010G129600 Sobic010G129600 Sobic009G160600--Sobic010G129600 Sobic007G056500 Sobic007G056500 Sobic009G160600--Sobic007G056500 Sobic001G042200 Sobic001G042200 Sobic009G160600--Sobic001G042200
Octagon: transcription factors


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